BtaEX6032575 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000017480 | PDE6B
Description
phosphodiesterase 6B, cGMP-specific, rod, beta [Source:HGNC Symbol;Acc:HGNC:8786]
Coordinates
chr6:108821229-108838648:+
Coord C1 exon
chr6:108821229-108821318
Coord A exon
chr6:108838346-108838486
Coord C2 exon
chr6:108838574-108838648
Length
141 bp
Sequences
Splice sites
3' ss Seq
AGTGGTGTGTCACCCCCCAGGTG
3' ss Score
8.76
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
Exon sequences
Seq C1 exon
GTTTTCCTGAAATACCTGAACTTCGGGACATTAAACCTGAAGATCTACCACTTGAGCTACCTGCACAACTGCGAGACTCGCCGTGGCCAG
Seq A exon
GTGCTGCTGTGGTCGGCCAACAAGGTGTTTGAGGAGCTGACAGACATCGAGAGGCAGTTTCACAAGGCCTTCTACACTGTACGGGCCTATCTGAACTGTGACCGGTACTCGGTGGGCCTCCTGGACATGACCAAGGAGAAG
Seq C2 exon
GAATTCTTTGATGTGTGGCCCGTGCTGATGGGAGAGGCCCAGGCGTACTCGGGCCCCCGCACACCTGACGGCCGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000017480-'2-4,'2-3,5-4=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0159021=GAF=PD(3.5=16.7)
A:
PF0159021=GAF=PU(18.1=68.1)
C2:
PF0159021=GAF=FE(13.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTCCTGAAATACCTGAACTTCGG
R:
GAGTACGCCTGGGCCTCTC
Band lengths:
138-279
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]