RnoEX0064383 @ rn6
Exon Skipping
Gene
ENSRNOG00000000065 | Pde6b
Description
phosphodiesterase 6B [Source:RGD Symbol;Acc:1311039]
Coordinates
chr14:2340867-2356609:-
Coord C1 exon
chr14:2356520-2356609
Coord A exon
chr14:2341028-2341168
Coord C2 exon
chr14:2340867-2340941
Length
141 bp
Sequences
Splice sites
3' ss Seq
CATGTGTTTTACCCCTCCAGGTG
3' ss Score
11.84
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
Exon sequences
Seq C1 exon
GTTTTCACGAAGTACCTGAATTTTGCTACATTAAACCTGAAGATCTATCACCTAAGCTACCTCCACAACTGTGAAACACGCAGAGGCCAG
Seq A exon
GTGCTTCTCTGGTCAGCCAATAAGGTATTTGAAGAACTGACAGACATTGAAAGACAGTTCCACAAGGCCTTCTACACTGTCCGGGCCTATCTAAACTGTGACCGGTACTCAGTGGGCCTCCTGGACATGACCAAGGAGAAG
Seq C2 exon
GAATTCTTTGATGTGTGGCCTGTGCTGATGGGGGAAGCCCAGCCATACTCGGGCCCACGAACACCAGATGGCCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000065-'3-5,'3-4,5-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0159021=GAF=PD(8.0=40.0)
A:
PF0159021=GAF=PU(18.0=68.1)
C2:
PF0159021=GAF=FE(13.5=100)
Main Skipping Isoform:
ENSRNOT00000000077fB10448
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTCACGAAGTACCTGAATTTTGCT
R:
CGGCCATCTGGTGTTCGTG
Band lengths:
162-303
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]