BtaEX6037081 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000009331 | CPAMD8
Description
C3 and PZP-like, alpha-2-macroglobulin domain containing 8 [Source:HGNC Symbol;Acc:HGNC:23228]
Coordinates
chr7:6089436-6091272:+
Coord C1 exon
chr7:6089436-6089546
Coord A exon
chr7:6090422-6090631
Coord C2 exon
chr7:6091155-6091272
Length
210 bp
Sequences
Splice sites
3' ss Seq
AGCTTCGCCTCGCCCGCCAGGCT
3' ss Score
6.13
5' ss Seq
TTGGTGAGG
5' ss Score
6.9
Exon sequences
Seq C1 exon
CCTTCGAGGCCACGCGCTTCTACAATGTCAGCGCGCGCAGCCCGCTCGCCCGGGAGCTGTGTGCGGGGCCTGCGTGCAACGAAGTGGAGCGCGCCCTGGCCCAGGGCCCCG
Seq A exon
GCTGGTCCCCTGAAGAGCGAGGTCCCGTGGCCGTTCCGGAGGAGGGGGTGACAGTCACGCGCTGTGGCTGCGCCCGCGCCTGCAGCATCAGCGGGGAGCCGGTGTGTGGCTCCGACGGCGTTGTCTACGCCAGCGCCTGCCATCTGCAGGAGGCCGCCTGCCGCCGCCGCGTGAGATTGGAGCCCGCGCCCCCTGGCCGCTGCGCGCTTG
Seq C2 exon
AGCAGCCGACACCAGCCTTGGCCTTGTACAGCTACGAGTATGACTTGGGTCCCCTGGACACCGGGCACCTGGCAGCTGGCCATGAGTTGGTGGACTTGGATAAGGAAGCAGAGGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000009331-'43-43,'43-42,44-43=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.026 A=0.141 C2=0.325
Domain overlap (PFAM):
C1:
PF076779=A2M_recep=PD(7.7=18.4)
A:
PF0764810=Kazal_2=WD(100=57.7)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCACGCGCTTCTACAATGTCA
R:
CTGTCCTCTGCTTCCTTATCCA
Band lengths:
220-430
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]