DreEX6098945 @ danRer10
Exon Skipping
Gene
ENSDARG00000056530 | CPAMD8
Description
C3 and PZP-like, alpha-2-macroglobulin domain containing 8 [Source:HGNC Symbol;Acc:HGNC:23228]
Coordinates
chr22:21267294-21273660:+
Coord C1 exon
chr22:21267294-21267404
Coord A exon
chr22:21267496-21267708
Coord C2 exon
chr22:21273583-21273660
Length
213 bp
Sequences
Splice sites
3' ss Seq
TATTGCTCTGTCACTCCCAGGCT
3' ss Score
7.98
5' ss Seq
AGAGTAAGT
5' ss Score
9.35
Exon sequences
Seq C1 exon
CATTTGAAGCCACTCGTTTCTATAATGTGAGTGAGAGCAGTCCTCTAGCACGAGAACTTTGCGATGGCACCACATGTAATGAAGTGGAAAGTTCCCGCAATCATTGGACAG
Seq A exon
GCTTTGTGCAAGGCAGCCAGTGCAACAACATTTTTGACTGTCCAGAAGAGGAACACTATGAGCGATGTACCTGTTATCGTGACTGCGGCTATGATGGCGAGCCAGTGTGTGGTTCAGATGGCCAAATCTACCAGAACCAGTGTCAGATGGAAGTGTCTGCTTGCAGAAACAGCACACGGATTGAACAGATGCCTTTCAGCCACTGCCCACAGA
Seq C2 exon
CGGGGGTAGTAGCTGTAGAAGAACGAGAGCGTGCGACAGGAGAAGAACCAGAGCAGGAACCTATACTCATTCCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000056530-'43-50,'43-49,44-50=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.021 C2=1.000
Domain overlap (PFAM):
C1:
PF076779=A2M_recep=PD(7.7=18.4)
A:
PF0764810=Kazal_2=WD(100=56.9)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATTTGAAGCCACTCGTTTCT
R:
CTGCAGGAATGAGTATAGGTTCC
Band lengths:
189-402
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]