BtaEX6037206 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000015735 | CYP4F2
Description
Bos taurus cytochrome P450, family 4, subfamily F, polypeptide 2 (CYP4F2), mRNA. [Source:RefSeq mRNA;Acc:NM_001075322]
Coordinates
chr7:8443544-8448024:-
Coord C1 exon
chr7:8447880-8448024
Coord A exon
chr7:8443762-8443815
Coord C2 exon
chr7:8443544-8443671
Length
54 bp
Sequences
Splice sites
3' ss Seq
ATTTTCTTTATTCATTTCAGCTG
3' ss Score
9.12
5' ss Seq
TTGGTGAGT
5' ss Score
9.27
Exon sequences
Seq C1 exon
GTGCCCTCCACGGAGCAGGGCCTGATCTACTTCACTCAGATGGCGGCCAACTACCCCCGTGGATATTTGATCTGGTTTGGCCCCATTATCCCAATGGTCATCTTCTGCCACCCTGACATGCTCCGGAGCATCACCAACGCCTCAG
Seq A exon
CTGCCATTGCACCCAAAGACATGCAGTTCTATGGCACTCTAAAACCCTGGCTTG
Seq C2 exon
GGGATGGGCTCCTGCTGAGTGCCGGTGACAAGTGGAGCAGCCACCGTCGCATGCTGACACCCGCCTTCCACTTCAACATCTTGAAGCCCTATATCAAGATTTTCACCAAGAGTGCAGAGATCATGCAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015735-'2-5,'2-4,4-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(10.3=100)
A:
PF0006717=p450=FE(3.9=100)
C2:
PF0006717=p450=FE(9.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGGTCATCTTCTGCCACCCT
R:
AGATGTTGAAGTGGAAGGCGG
Band lengths:
133-187
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]