RnoEX0026013 @ rn6
Exon Skipping
Gene
ENSRNOG00000043344 | Cyp4f40
Description
cytochrome P450, family 4, subfamily f, polypeptide 40 [Source:RGD Symbol;Acc:1559596]
Coordinates
chr7:14868603-14871629:+
Coord C1 exon
chr7:14868603-14868747
Coord A exon
chr7:14871358-14871411
Coord C2 exon
chr7:14871502-14871629
Length
54 bp
Sequences
Splice sites
3' ss Seq
ATGATTCTTGTTCATGTCAGCTG
3' ss Score
5.87
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
Exon sequences
Seq C1 exon
TCCCCTCCTACAGAAGAAGGCATGAAGCAGATGACTGAGCTGGTGGCCACCTACCCCCAGGGCTTCATGACCTGGTTAGGCCCTATAGTTCCCCTCATCACTTTGTGCCACCCTGACATCATCCGATCTGTCCTCAGTGCCTCAG
Seq A exon
CTGCGGTTGCTCCCAAGGATGGCATCTTCTACAGCTTCCTGAAACCCTGGCTGG
Seq C2 exon
GGGATGGGCTCTTGGTGAGTGCCAGTGACAAGTGGAGCCGCCACCGTAGCATGCTGACACCTGCCTTCCACTTCAACATCCTGAAACCCTATGTGAAGATTTTCAATGACAGCACCAACATCATGCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000043344-'1-3,'1-2,2-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(10.3=100)
A:
PF0006717=p450=FE(3.9=100)
C2:
PF0006717=p450=FE(9.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCCCCTCATCACTTTGTGCC
R:
GTTGAAGTGGAAGGCAGGTGT
Band lengths:
134-188
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]