BtaEX0001276 @ bosTau6
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E1BHD5]
Coordinates
chr7:8508473-8513652:+
Coord C1 exon
chr7:8508473-8508670
Coord A exon
chr7:8513379-8513432
Coord C2 exon
chr7:8513525-8513652
Length
54 bp
Sequences
Splice sites
3' ss Seq
GTGGTCCTCATTCATATCAGCTG
3' ss Score
5.21
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
Exon sequences
Seq C1 exon
ATGCTGGAGCTGAGCCTGTCTTGGCTGGGACTCGGGCCAGTAGCAGCCTCCCCATGGCTGCTGCTGCTGCTGGTCGGGGCTTCCTGGATCCTGGCCCACGTCCTGGCCTGGACCTACACCTCCTACAACAACTCTCTCCGCCTCCGATGCTTCCCGCAGCCCCCAAAACGTAACTGGTTCTTGGGTCACCTGGGCCTG
Seq A exon
CTGCCATCGCACCCAAGAATGTGGTCTTCTACAACTTTCTGAAGCCTTGGCTGG
Seq C2 exon
GGGATGGGCTCCTGCTGAGTGCTGGTGACAAGTGGAGCAGCCACCGTCGCATGCTGACACCTGCCTTCCACTTCAACATCCTGAAGCCCTATATGAAGATTTTCACCAAGAGCGCAGACATCATGCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000039319_MULTIEX1-2/2=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=PU(3.0=21.2)
A:
PF0006717=p450=FE(3.9=100)
C2:
PF0006717=p450=FE(9.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGGTTCTTGGGTCACCTGG
R:
GATGTCTGCGCTCTTGGTGAA
Band lengths:
148-202
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development