BtaINT0007898 @ bosTau6
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E1BHD5]
Coordinates
chr7:8510494-8513432:+
Coord C1 exon
chr7:8510494-8510638
Coord A exon
chr7:8510639-8513378
Coord C2 exon
chr7:8513379-8513432
Length
2740 bp
Sequences
Splice sites
5' ss Seq
CAGGTACCC
5' ss Score
8.63
3' ss Seq
GTGGTCCTCATTCATATCAGCTG
3' ss Score
5.21
Exon sequences
Seq C1 exon
GTTCCCCCCACGGAGCAGGGCTTGAGCAAAGTAACTCAGCTGGTGACCAACTACCCTCAGGGTTACTTGATGTGGATGGGCCCCATCATCCCCCTGGTCATTTTCTGCCACCCTGACTTGATCCGGACTTTTGCCAGTGCTTCAG
Seq A exon
GTACCCAGGCAGAGCTGGTGGTGGTGGGTGCCATGATACACCTCAGGGCTTCCAGCCGCACCCCTGCCAAGCTTCCATGTGGCCCCTACAGGACCCCAACCCCCTTCCCCTCCTCTCTCTGCCATCTTCCTCTTTCCTTCATGTATTGATCACTGCCATCTCACATCCTCCTCCTTTCTCTCACTGCCATTTACACCCCACCCTGGTGTCCTGGGCAAAAGACAGGACATGAAGATTCAGATTCAGGCAGAGAGATCTGTGACCTGGTGTGGTCAGGAATTGGCCAGAGGGAAATGAGCTCTGCAAACCCAGAGAAGAAGCAAGATTCTCTTCTAGGGGATGCTGGAAGGATTCCTGGAGGAGTAGTTGGAACTGGGTCTGGAACGACGAGCAGAAAGTTTTTAAAACAGAGTATGGAGTGATGCATGGGCATCCATAACATCCCAGGTCCCCTGCCAGACCTTCCCTCAGTCCCCACCTATCCCCAGGTGCTGAGCAATGATGGCTTATGGCTAGTGTACATATAAGTTGCTATTCCCATGACATCTACCTCTCTGGTGGGTCACTTTATTTTCCCCTATCTTGGAGCTGGTCCACTTCTAGATCAGTGCCCTCCTTCTCCAGTTGCCAGGAATCTTCCTGAGGAGACTCCACCCCACCCTGGCTCTCTTCCCTTGTCCCCTACCCCTCCCATCCGCAGACAGATGACCAGGCAAGCAGGGGAACAGACAGCGTGTAACAGAAACCTGGCTTCAGACCCAAGAATGCAGAGTGAACATGAGAAGGGCCTTGGCTCACTCTGGCTGCTGAAGTCTCCTTCAGCTGTTAGTGGTAGAAATGCCACCCCGTATGACCTATGGAAAGAAAAGGAATCAAGTGACTATAAAGTCCAAGGAGGGGTATCTTCAGACCCAAATCTATCCATATCTATATAATGTCGTAAGAAATCTGTTTTCCTTGTTTAGATCTCTGTTCCTCTGTGGTGGCTTCCCTATCATCTTGGTAAAACTGAATCCAACAAGCTCAACCCCCATGGAAAAGTGAGCTCATTGACAACATTTTCAGGAAAAGACACAGGATTTCCCTAGCCTGTGTTATAGGACCCATTCCTGTGTCCCTGAAACTCTGAGTACCCAATCTTGGAGGTGGTTTAAGGGTCCTCTAAGCTGTTGTTTTGAGGCTCAGAGTGATTTGATGGTTAAGAACACAGACCCTGGGTTCAGAGAGATGTGGCTTATTGTCTCAGGCTTATTGTCTGAGAGAATGTGGGCAACAGACTCCATTGTTCAGAGCCTCAGTCTCCTTATCAAGAATATGGGAATGGAAGAGAAGTCAGGGGAACACGGTGTTTGGGGTCCAAACAGAAAAAGACCCTTCCTATCCCTATATTCAAGGGACCCCAATTATCACGTATGGAGGATAAAGGGAGAGAGGGTGGCAGGAGGCTTAGGACAGAGGAGCAGCTGCTGGAGGTGATTCACCGTCCCAGCTCTGGATCACTGCCCTCCAGGTCCTTCCCTCTGGCAGCCTAGAAGAGTGTGAATTGGGTCCTATTTGTTCCTCTCCAGATTCAGAGCTCAGAGGAAGGTCTCCTGTACACTCAGGGCCTAGCCAGCACCTATGGGGATGCGTGCTGCTGGTGGATGGGACCCTGGCACACAATCATCCGCATCTTCCACCCCACCTGCATCAAGCCTGTGCTCTTTGCTCCAGGTAGACGCCTCCCTGGCCATAGCTTGCCCATTGCCAGGGTCTCTGTGTTGCCTCTAGTTGTACAAGTGACCAGGATGCAGGCAGAGGGGGGCATGGCAAAGATGCCACTGTCTCCCACTGCAGAATCCCAGCTGCATGCTCTCCAGTCACGTCTGTGCAATGTCTGCTGAATGGCCACATCTGATCAGATTTATGTTTCTACGTGGATTCTGGTTACAGTTGGTGTATGTTATATCTAGTAATACCTGGTATATGTTTAAATCTGAGTTCAGAGATGTTCTCAGTCATGTCTAGAGCTCATCTGTGGCCAAGGACATTTGAGGCATCTTGAAGCCTCTCTGGTTCTTGTCTGAGATGCTGTTAGAAATTGCCTGGTTCTCCAGTTGGTCACTTCTGGGTGTCTGTCTGAGGTCTGGAACTCCAGGGTCACTCTGAGAAATGCCTGAGACCTTATGTGAATCTTGTCTGATGCTTAGGATATGTTTGAGTTTTGCCTGGTTCAGGTCTGTGTCATCAGTGTATTCAAGTCCTGTCTGGAGTCCACGTGGGGCACACTGAGGTGATGCCAGATTGTCTTCAGGCCCATGGCAAAGCATCCTGTCATGTCATCTTGTATCATTCATGGTATGGCCTTGTTAGGACTTGTTAAGATATGGGACCATGTCAGATGTCTCAGAAGGGGTCAGTGCTGGGGCAGATGTGGTGTCCTAGGTCCCTGTAAAGGTGTTTTGTAAAGTGATAGACCATACTTGTGAGGTAGAAGATGCAATGTCCAGTCATATGTCAGGTTGGGGTGTGTCTAAGCACATTGAGATGTGTCTATGGGCCCTGCCTTTGCTCTGTTCTGTGCTGTGGCCTGGTCTGGTCTGGTCTCCTCTCCCCTCCCAGCTTCCTGTGCTCTTGGTCCCATTCTGCTATGTTGGGCTTGGAGGGGGAATGCTGATTCTTGGCTGGGAGCCTCCACTCCCCACTAAAAGACCCTCCCCTCCCCATCTCCTTGGTCCCTGGTGGTCCTCATTCATATCAG
Seq C2 exon
CTGCCATCGCACCCAAGAATGTGGTCTTCTACAACTTTCTGAAGCCTTGGCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000039319:ENSBTAT00000036382:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(10.3=100)
A:
NA
C2:
PF0006717=p450=FE(3.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]