HsaINT0044481 @ hg38
Intron Retention
Gene
ENSG00000186115 | CYP4F2
Description
cytochrome P450 family 4 subfamily F member 2 [Source:HGNC Symbol;Acc:HGNC:2645]
Coordinates
chr19:15892529-15895650:-
Coord C1 exon
chr19:15895506-15895650
Coord A exon
chr19:15892583-15895505
Coord C2 exon
chr19:15892529-15892582
Length
2923 bp
Sequences
Splice sites
5' ss Seq
CAGGTACCA
5' ss Score
7.88
3' ss Seq
ATTGTCCTCATTTATGTCAGCTG
3' ss Score
5.59
Exon sequences
Seq C1 exon
GTCAACCCCACAGAGGAGGGCATGAGAGTTCTGACTCAGCTGGTGGCCACCTACCCCCAGGGCTTTAAGGTCTGGATGGGACCCATCTCCCCCCTCCTCAGTTTGTGCCACCCCGACATCATCCGGTCTGTCATCAACGCCTCAG
Seq A exon
GTACCATCTGGAACAGCTGGTGGGGCAGTGCATTTGAGGCCTGCACTTCCGCTATCCCCAAGCTCCTGTGTGGGCCCTGCAGTACTCTGGCCTCTCCTTTCCTTCCCTCTCAGCTATCTTCATCTTTCTTTCATGTATTCATCAATTTCCATCTCAGCGTCTCCTCTCTCTATTGCCATCTACCCCCTGTTCTGGTGTTCTGGGCTGCCCTGGAACCCTAAGAGACCTCAACCCAAGGCCCAGTCCTGGAGGAACCCCCAACTTTAAGGAGATGGACCTGGATAGAGATATCCCCAACTTCATGGGATCAGGAAAGGGCCAGAGGGAGATGGATCACAGCCCAGGGAAGAACAAGGTCTCTGCTGGGGCAGGCTGGAAGGCTTCCTAGAGGAGGAGTTACTGGAGCTGTGTCTGGAACAATGAGTAGGAATGTTTGAAAGGAGAGTGCAGGGTGAGGCAATTGGACATCGTTAGTATTCAAGGCCCCTTGCCAGGCCTAGCATCACCTTGCCTGTCCCAAAGCCTAGAACAATGAGGAGGACTTGTGGCTGGTGGGGGATCTGGGCTGCTACTTCCATGATGTCCACCTCTGGTGGGTCAATTCCCTTTACCCCATCCTATAGCTTGTCTGCCCTAAGTTCGTTGCTCTCCTGCTGCAGGTCCCGGGGATCTCCAAGAGGAGACTCCACCCCAGCTTGGGTCCCTTTCCTTGACCCCTGTGCTTCCCATCGTTGGACGGGCGAGGCTGAGCAGGGGGAATGGGCAGCATCCTACAGAGACCATGGCTCTGACCTCAAAATGCTGAGTGACTCTGGGCTGGTACCCAGCTGTCTCTGGTTATTGAAGTCTCTTTCAGTTGTGAGTGGTGGAAACCCAACCTGGTGTGGTCTAAGCAAAGAAAGATAATCTATTGACTTTAAAGTCCAGGGAGGGTGGCCTTCAGGCATGGCTGGATCCAGGTCTCACACAAGGTCACTGGAAATCTGTCTTTCTCTCTTGGCTTTAGCTTTCTCCATGTCGCTTTTCCTATCAAGGTGGCCTTTTCCTCATGATGTCAACGATGAGTCCCAGAAGCTCAGTTCTTATGGGAAAGGCCACCTTTCCCCTAGAGTTCCCAGAAATGGCCCATGGTTTACTTCTCCTGGCCTGGATCACAGGACCAATTTTTCACCCAATCCCTGTGTCTCTGATTGCCCAGTCTTGGTAGGCCTGGGTCTTCCAGAGCTACTGTTTTGGGGGCACAAAGAAGTTTGTTGGTTAAGGATTCAGGCCATGGGTGCAGACAGACCTAGTCTTAGGCCTCAGGCTTGCCGTGGTCTGGGACTGTGGGCAAGTGACTTTATTGTTCAGAGCCTCAGGCTCTTCATCTGGAAAATGGGATGAATGAGAGCCCAGGGAACATGGTGTGTGGATCCACATGGGGAAAGACCTTTTCTGTCTGTGTAACTGAAGGACTGGAGAGTCCTGCATGGAGGATGTGAGGAGGCAGGGGGTGCTCAGCACTGACAGGAGGATGAGATGCTGCTTGAAATTCTCAGGGAGAGGGCTTCGACCTCTTCCCTGCAGATCCTTCTCTCTCACAGCCTAGGAGAGCATGAATTGGGTCCTGTGTGTTTTTCTCCAGATTCACAGCTCAGAAGAAGGTCTCCTATACACACAAAGCCTGGCGTGCACCTTTGGGGATATGGGCTGCTGGTGGGTGGGGCCCTGGCAGGCAGTCATCCACATCTTTCTCCCCACGTGCATCAAGCCTGTGCTCTTTGCTCCAGGTAGACATCGCACTGGCCAAGCTTTGCCCACAGCTGGGGTTGCTGTGCTGCCTCCAGCTGAACACGTGACCGATGTGCAGACAGGAGGGGCTGTGGTGGAGATGCCATTGCCTCCATCGCCCCTGGACTTCCACCTGTCTAACCTCTGTTGCTGTTTGCTCATGTCTGGGGCGTGTCTCTACAATGGCTGTTATATGGCCAGGTCTGCCTTGTATATTTACACCTGGGTCCTGGTTACACCTGAAATATGTTATACCTGGTTACATCTGGTATATAATTCCAACTGGGGTCATGTAGAGCTGGTCAAGTTTGGGGCTTATCTGTGGCCAAGGACATTTGGGGCATGTGAGGGCCTGTTTGGTTCTTGTCTCAGGTGCTGTTTGACACTGCCGTTTTCTCCTGGTGGTCCAAACATCTGGGCGTTGTGTGAGGTCTGGGGGTTGTGTGAGGTCTGGGACCCAGGGTCCCTATGTGAACTGTCTGAGACATTATTTGAGTCTTGTCTGAGGCATGTGTTATAGTATATTTGGGTCATGCCTGAGGAACAGTCTGGTTCACATGTTGGCTATGTCTGTGACATTAAAGGTACCATATTTATATTCAACCCAGAGCCTGTATGTGGAACACGCTTTTAAGATCATGTTAGACCATCTCATGTGCATGTTAGAGCACACCATCTCATGTTAGGAATTGTCATGTATTTTGTGGCCATGTCAGGACATGTGAACACATGTCAGGGTCATGTCTCATGTCCAGGTCCATGTCAGAAGATGCCATATCAGAAGATGTCAGAGAGTGCTGGGACAGACAGGGTGTCCTAGGTCCTTGTGAAGCATTCTGTAGAATGCTGAGCTGTGCTCAGGGGTTGCGGAACATGTTGGATCGTGTAGGAGGCATGTCAAGGCATGCTGGAACCCTGACATAGCTCCTACACGCCATGTTAGGCAGTGTCATTGCTGTACTGTGCTGCTGTAGCCTGGTCTGGTCTTCCCTCCCCTCCCCATCCTCCCTTCTTCCTCTGCCCTTGGCCCTCTTCCTGCTATGTGGGGCTCAGAGTGGGAGAAGTGCAAACCTCTTGCTGGGAGCCTCCACCCACCCCCAAAGTCCCTCTTTCACCTGCCTCCATGGCCCCTGATTGTCCTCATTTATGTCAG
Seq C2 exon
CTGCCATTGCACCAAAGGACAAGTTCTTCTACAGCTTCCTGGAGCCCTGGCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000186115:ENST00000221700:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(10.3=100)
A:
NA
C2:
PF0006717=p450=FE(14.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development