RnoINT0044595 @ rn6
Intron Retention
Gene
ENSRNOG00000032895 | Cyp4f4
Description
cytochrome P450, family 4, subfamily f, polypeptide 4 [Source:RGD Symbol;Acc:708363]
Coordinates
chr7:14894342-14896264:+
Coord C1 exon
chr7:14894342-14894486
Coord A exon
chr7:14894487-14896210
Coord C2 exon
chr7:14896211-14896264
Length
1724 bp
Sequences
Splice sites
5' ss Seq
CAGGTACTT
5' ss Score
8.17
3' ss Seq
ATCACCCTTGTTCATGTCAGCTT
3' ss Score
5.66
Exon sequences
Seq C1 exon
ATCACTCCCACTGAGCAAGGTCTGAAGCAGGTAACTAAGCTCGTGGCCACCTACCCCCAGGGCTTCATGACATGGCTGGGTCCTATCCTCCCTATCATCACTCTGTGCCACCCTGACGTCATTCGATCTGTTCTCAGTGCCTCAG
Seq A exon
GTACTTAGGGGAAGCTGCTGGTGGTGTGGCTGTGGGAAACAGGCCTTCTATGCTCATGCTTCTCTGTGACTTCTGAAGTAGCTCAGTCCTCCTTTCCCTTGGCTTTCTCCGCTTTTGCTGAAGATGTCAGAAGGAAGCGCAGGCAGGGCTCAGTCCAGGGGATGGTAGAATCTTCAGGGCTCACTCCGGTCCCCTTTCTCAATAATCCTTTTCTTGGAATGCCTAGAGATCTTGGGATTCCTTTCTATTCACCTCCATTCAGAGCTGAGAGGAAGGTGTCTGGTGCCCTCATTGCATGGTGTGTACCACTGGGGGCGGGGGTGTATGCTACTGGTAGATGGAGACCTGGCAAGTGGTTATCCACCTCTTCCACTCACATCAAAGAGGCTTATGTTTCCTGATCCAAGTGGACATTAGACTAGCCTGTTTGCCTACTGCTGAGGTCTCTATGCTGTCTCCAGCTGTGCAGGTGACCAGAGTGCAGGCAGATGAGACTACTGTAGTTATTCCCTTGCCTCTGCCTCACCTTCAGTATCATGATTGATATGGCCATCTCCTGATCACACCTGCTGTATTTGCTTTTTTTTCCTATTACTAGCACAATGTCATTGAGTAAAGATTTGTTTTTACTTGTGATTCAGGATTCATAGTGATAAAAGAGAGATTGACACATAACTGGCTAGAAGAGGGGAGGAAAGGAAGAAGAAGGAAACTCAGTTCAAGATGTTTCAAAGGGACTACTCTAGTGACCTACTTTCTTTAGCTAAGCTCCGCTTCCTAAGATTTCTAGAATCTTCCAAACTAAAGGCAGCATCTGAGGACTAAGTCTTTCAGAGCACAAGCTGGTTGAAGATATTTCATATTCACACTCTAACAACTGGTACATGTTGTCCCAGGTATGAACCAAGTTTAATCAAATGAATATGGCCTTATCTAGGGCTCAAGAGCTATGGACATTTGGAGCACATCTGTTTCTTGCCTGAGCAGTTGTTTGAAATTATATTTTTCTCCTGATGAAAACACTTTTGCCATTTGAGAGGTTTATGATCTTGGACACTTAGAGTCCTACTGAAATAGAAACATGGCTGAGATTTCTTGTTTGAGGCAAGTGTGATATCTAACTGGACCACATTGATGCCATATCTGTGAGATGATTGTGACTATTTTTAAATGGTATCTGGGACCTACATATGGGGCACATCAAGACGTATCAGATCATCTATTTCCATTTTAAAGCAGATGGGGTCATTTAGGGTAGGTCACATGGGTTTCAGCTGTGTAAGCCCATGTTACTGCCTATATATCCATGACACATATCTATATCAGGAGATGTCAGAGCATGCTGGGATGGTCAGGTATGCTAGGTCTGTAGAATGTCATGCTATATTTGAAGGGCAGTCATGGTAGACTATGTTGAAGCCAAGTGAAGGAACAGTGAGGTGAGTTGCTTTTATCTTACCTAGTATTCTGTCTCCTCTCCTCCTTTTCTTCCTCCTCCTCCTCTTCCTCCTCCTCCTTCTCTTCCTCCTCCTCCTTCTCTTCCTCCTCCTTCTCTTCCTCCTCTTCCTCCTCCTCCTCCTCTGCGTCTTATGTCCCTTTCTCTAACCCTATCATGCTGGTTTTGGGGTAGATATGCATGCCTCTCACTGAGCCCTGCCCCCACACACTCTGCGAGTTCATTTCCTAGCCTCTTCATGGCTCCTGATCACCCTTGTTCATGTCAG
Seq C2 exon
CTTCGGTTGCCCTAAAGGAAGTAATCTTCTACAGCTTTCTGAAACCCTGGTTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000032895:ENSRNOT00000041034:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(10.3=100)
A:
NA
C2:
PF0006717=p450=FE(10.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCACTCCCACTGAGCAAGGT
R:
CCAACCAGGGTTTCAGAAAGCT
Band lengths:
199-1923
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]