HsaINT0044515 @ hg38
Intron Retention
Gene
ENSG00000186529 | CYP4F3
Description
cytochrome P450 family 4 subfamily F member 3 [Source:HGNC Symbol;Acc:HGNC:2646]
Coordinates
chr19:15645719-15647105:+
Coord C1 exon
chr19:15645719-15645863
Coord A exon
chr19:15645864-15647051
Coord C2 exon
chr19:15647052-15647105
Length
1188 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGAC
5' ss Score
6.89
3' ss Seq
ATTGTCCTCATTTATGTCAGCTG
3' ss Score
5.59
Exon sequences
Seq C1 exon
ATTCACAGCTCGGAGGAAGGTCTCCTATACACACAAAGCCTGGCATGCACCTTCGGTGATATGTGCTGCTGGTGGGTGGGGCCCTGGCACGCAATCGTCCGCATCTTCCACCCCACCTACATCAAGCCTGTGCTCTTTGCTCCAG
Seq A exon
GTAGACACTGCACTGGCCACTCCAGGTAGACACTGCACTGGCCACGCCTTGCCCACAGCTGGGGTCTCTGTGCTGCCTCCAGCGGGTCGCGTGCCCATGTGCAGACAGGAGGGGCTGTGGTGGAGATGCCACTGCTTCCATCTCCCCTGGACTTCCATCTGTCTGACCTCTGTTCCTGTTTGCTCATGTCTGGGAAGTGTCTCTATGGTGGCTGTTATATGGTCAAGTCTGCTGTACGGCTACGTCTTGTCACCTGTATATTTACACCTGGGTCCTGGTTACACCTGAAATATGTTATACCCGGTTACATCTGGTATATCATTCCAACTGAGGTCATGTAGAGCTGGTCATGTGTGGAGTTCATGTGTGGCCAAGGACATTTGGGGCATGTGAGGGGCTGTTTTGTTCTTGTCGCAGGTGCTGTTTGACACTGCCGTTTTCTCCTGCTGGTCACATCTGGGCCATGTTTGGGGGTTGTGTGAGGTCTGGGACCCAGGGTCCCTAAGTGAACTGTCTGAGACATTATTTGAGTCTTGTCTGAGGCATGTGTTGTAGTATGTTTGGGTCATACGTGAGGAACAGTCTGGGTCACGTGTTGGCTATGTCTGGGTCGTTAAAGGTACCATATTTATATTCAACCTGGAGCCTGTATGTGGAACACGCTTTTAAGGTCATGTTAGACCATCTCATGTGCATGTTAGAGCATACCATCTCATGTTAGGAATTGTCATGTATTTTGTGGCCATGTCAGGACTTGTGAACACATGTCAGTGTCATGTCTCATGTCTAGGTCCATGTCAGAAGATGCCATGTGAGAATATGTCAGAGAGTGCTGGGACAGACAGGGTGTCCTAAGTCCTTGTGAAGGCATTCTGTAGAGTGCTGAGCGTGTTCAGGGTTTGCAGAACATGTTGGATCATGTAGGAGGCATGTCAAGGCATGCTGGAGCCCTGACATAGCTCCTACGTGCCATGTTAGGCAGTGTCATTGCTGTGCTGTGCTGCCGTAGCCTGGTCTGGTCTTCCCTCCCCTCCCCCATCCTGCCTTCTTCCTCTCCCCTTGACCCTCTTCTTGCTATGTGGGGCTTGGAGGGAAGAAGTGCAAACCTCTTGCTGGGAGCCTCCCCCCACCCCCAAAGTTCCTCCTTCACCTGCCTCCATGGCCCCTGATTGTCCTCATTTATGTCAG
Seq C2 exon
CTGCCATTGTACCAAAGGACAAGGTCTTCTACAGCTTCCTGAAGCCCTGGCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000186529:ENST00000221307:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(10.3=100)
A:
NA
C2:
PF0006717=p450=FE(3.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTCACAGCTCGGAGGAAGGT
R:
GGAAGCTGTAGAAGACCTTGTCC
Band lengths:
184-1372
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development