BtaINT0046291 @ bosTau6
Intron Retention
Gene
ENSBTAG00000015735 | CYP4F2
Description
Bos taurus cytochrome P450, family 4, subfamily F, polypeptide 2 (CYP4F2), mRNA. [Source:RefSeq mRNA;Acc:NM_001075322]
Coordinates
chr7:8443762-8448024:-
Coord C1 exon
chr7:8447880-8448024
Coord A exon
chr7:8443816-8447879
Coord C2 exon
chr7:8443762-8443815
Length
4064 bp
Sequences
Splice sites
5' ss Seq
CAGGTACCC
5' ss Score
8.63
3' ss Seq
ATTTTCTTTATTCATTTCAGCTG
3' ss Score
9.12
Exon sequences
Seq C1 exon
GTGCCCTCCACGGAGCAGGGCCTGATCTACTTCACTCAGATGGCGGCCAACTACCCCCGTGGATATTTGATCTGGTTTGGCCCCATTATCCCAATGGTCATCTTCTGCCACCCTGACATGCTCCGGAGCATCACCAACGCCTCAG
Seq A exon
GTACCCAGGCAGAGCTTGTGGTGGTGGGTGCCATGACACATTTGAGGGATTCCAGCTCCTCCTTGCCAACATTTGATGTGGCCCCTACAGGACCATGGCCCCTCCTCCCCTCTCTGGCTCAGCCGTTTCCTCCTTTCTTTCATATATTCATCAGCCCCCATTTCACTGTCTCCTTCTTCCTCACTCTGTTATCTATACCCCACTCTGGTGCCCTGTTGAAAGATGTCCCAATCTCAGGACTCAGAGATGGAACAGGATATCCCTGATCTGGTATGGTTGGTCAGGAATTGGCTGGACGGAGATAGGCTGTGGCGACCCAAAAAGAAGCAAGGTCCTCTGTCAGGGCATGTTGGAAGGCTTTCTGGAAGAGGAGGTGCTGGAACTGGATCTGGAACAATGAACAGATATATTTGAAAGCAGAGGGTAGAGTGATGCAGTGGGCATCCATAGCATCCCAGGCCCCCTGGCAGGTCTGCCCTCACTCATCCCCAGATCCCCAGCAATGAAAGTTTATGTCTGGTGCATGATCTGGGCTGCTATTTTTGTGACATCCACCTCTCCAGTGGGTCGGTTTCTTGACCGTATCCTGTGGCTCAGCCACTTCTAATTCTGGGCCTTCCTTCCCGGCTGATCCAGGGTATTCGAAGCGGGGACGGCGTCGGCGACCTATTTATTTATTTAAATATTTTATCAAAGATATAAAGAGTAATAGGATGAGGATAGCTCAGTAGGAAAATTCAGTGGAGAAAAGAGGCTGAGTGGCTTGGTTTACGCCGGAGACCAATAAAACTTCAAGACAAGAAGTTTGCACCACTTACGTAGGCCGCAGGCGTCCTTCCGTTCTCCCGAAGGAGAGGAGACACTGAGGCCTCCCCGGTCGGATCTTAGAAGCCCAGGCATAATTAGTAAGCATGGCGGGTTCCGCGCTCCAGATGGAGACTCAACCAGAGTGAGAGAGAGAGCGACATGGGGAGACCAGTATTTCGAGAAACTGATCCCAATTCTTTATTTTCCAGAGTCTGTTTTTATACACTGAGATGTTATACAAAAGTCACGTGGGGACAGCAGTCCTGACTTTTATTAAAGTCAGGTGCTTCACACAAATGTATACAGAGGTCTTAGGGATGTTACATCATCTTCTGGCCAGGGGGGCCTGCTGACAATTTACGACCCTCTCCTTGTGACAGCGGTCAGTCAGTCAGGACACTTATTTCTCCAGGGCTGATTAGTCTCAAAACAGACGCCACCCAAATAAGGTTACATTCCTACAGGGTGAGGGTGTAGTGGGTTTTAGTTAAGGAAAGAATTTACTTAGCCTAAGGTCTAACGTGATTAATATCAAAGGTTAATACTTATTCCTTCTATATATTCATTAATGTGTGTAAGGGCAGGGGATATGGAGACTTAGCAACAAACGTTGGCTCAACAAATGAAAAACCCTTCACCAACACAATTTCTAATTAGCCCACTATACTTATAGTTTTCTAACTTCTCTAAAGAACCTGTTTTTAGAGGGTTTAAAGCATCTCGTGCCTCTCACGGTTGGGAGGCTGTGAGCAATCACATGTGGCCCGACGAGCCTGTCAGGCAGGCTAGAGAACCTTCAGAGGAGTTTGTAGGTTAAAACACTCTTGTCACACCCAAGAGTTTTTATTGACTGGAGCTCTAGGTTAACTCCTTCTCCGAAAGAGGTGGTGGGGGACAGCCCCCCGTAAAGTCAGAGGTGTAGGTAAGAGCACAAAGTAGTAAAGTAGGCAGGCTCTGGTTATGGGGGTAGATGCTCGAGGAGTTCCAGGGGGACTCCTGAGGCTCGATCCCGCCTTTGCATATGTCGAGCCTCCTTCCTCATGACCTTTGTCACGGGCGGAGTACCTCACTCTGGCCCCCAACACAGTGCCCAGGAATCTCCCTGAGGAGACTCTACCTCATCCCACCCTGGCTCCCTAACTTTGTCCCCTGCCCCGCCCATCCACAGACAGACCAGGCAAGCAGGGGAATGGGCAGCTTCTGACAGAGACCTGGTTTCTGACACCAGAATGCTGAGTGACTCTGAGAAGGGCCCTAGCTCTCTCTGGCTGCTGAAGTTTCTTTCAGCTGTTAGTGGTGGAAACTCAACCCTGTATGATCTATACAAAGAAAGAGTATCAGTTGACTGTAAACTCCAAGGAAGATGTCTTCAGGACAGCTGGATCTGGGTCTTAAAATGTCATCAGAAATCTGTTTTCATCATTTAGTTCTGTGTTCATCTGTGATGGCTTCCCTCTTATCCTGGTAAGATTGAATCCTCCAAGCTAAACCTCCATAGAAAAGTGAACTCATTAAAAACAGTTTTAGAAAAAGTTGAAGGTTCCCTTTAATTTGCCTGGCTGGGGTCATAAGACCAATTCCCATGTTCCTGAGAGTCTGATTGCATGTCTTGGCAGGCACAGGGTTACCTGAGCTATTGTTTTAGGGCTCAGAGCAGTTCAGTGGTTAAGAACTCAGACCCTGGATTCAGGCATACCTGGCCTCATGTGTCAGGCATAGTATCTGTGTGACTGTGGGCAAGTCATTTCAATATTCAGAGCCTCAGTTTCCTTATCTGGAATATGGGGGTGGGAGAGAAGTGAGTTGAACGTGGTGTTTGGGTCCACACAGGGAAAGACCCTTTCTATCCCTGCACCTGAAGGGACATCCAGCTGTCCTTTATGGAGAGTGTGGGGAAGGAGCCTGAGAAAGCGTGAGGACAGAGGAGCAGCTGATGAAATTGATTCATGGCTTCAGGTGCGGCTCTCTGCCCTGCAGGTCCTTCCCTCTGGCAGCCTAGAAGAGCTTGAATTAGGTCCTAATTGTTCCTCTCCAGATTCAGAGCTGGAAGGAAGGTCTTCTGTACACACAGGGCCTGGCCGGCACCTATGGGGATGCTTGCTGCTGGTGGGTGGGGCCCTGGCACGTGGTCATCTACATCATCCACCCCACCTGCATCAAACCTGTGCTTTTTGCTCCAGGTAGATCCTTGGCCACAGCTTGTCCCCTGTCATGGTCTGTGTTGCTTCTAATTGGGCAGCTGATCATGATGCAGACAGTGGGGGGGGAGGGGGGGGCGGGGGGTGTGGCCAGGGTACCACTGTTTCTCAAGGCAGACTCCCACCTGCCTGACCTCCAGTCAAGTCTGTGCAGTGTCTGTTGCATGGCTACATCTGGTCACATTTATGTATCCACATGGATTCTGGTTACAATTGGTGTATGTTATACCTGGTGCCACCTAGTATATTTTATACCTGAGCTCAAAGATGTTCTCAGTCATGTCTGGAGCTCACCTGTGGCCAAGGACATTTGAGGCATCTAGGAGTCTCTCCGGTTCTTATCTGAAATGTCATTAGAGATTGTCTGGTTCTCCTGTTAATCACTCCTGGGCCACATGTGAGGTTTGCCTCAGGTCTGGGGCTCAGGGTCACTTTGAGAAATGCCTGAGACCTTGTGTGAATCCTGCCTGTTTTAGGTCTTAAGGTATGCCTGGATCACACATGGTTCATGTCTGTGAGGTCACTGGATTCAAGTCATGCCTGGAGCCTGCCTGGGGCACCCTGGGAACAGGTCAGATGGTCTTCAGGTCCATGGCAGCGCTGTTGCATCATTTCAGGTTGTGTCATGCATGTTGGGGCCATGTCAGGCCATGGTAACACATGGGGCCATGTCAGATGTCTCAGAAGAGGTCCCCGTGCTGGGGCAGGTGTGGTGTTCTTGGTCCCTGTAAAGGTGTTTTGTAGAGGGCTGGGTTTTGCTTCCGTGTCAGAATGTGTTGGACTCTGTAGGCTATGTCAAGGAATGTTGGGGCATGTTGTGTCACTCTGGGGTGTGTCTAAGCACACTGAGTTGTGTCTATGGGCTCTACCTTTGCTCTTCTCTGTGCTGCAGCCTGGTCTGGTCACTTCTCCCTTCCCAGCTTCCTGTGCTCTTGGTCCCATTCTGTTATATTGGTCTTGGAGAGGGAATGTAGATTCCTGGCTGGAAGCCTCCATCCCTCAGCAAAAGTCCCTCTCCTTCCCATCTACGTGGCCCCTGATTTTCTTTATTCATTTCAG
Seq C2 exon
CTGCCATTGCACCCAAAGACATGCAGTTCTATGGCACTCTAAAACCCTGGCTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015735:ENSBTAT00000020890:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(10.3=100)
A:
NA
C2:
PF0006717=p450=FE(3.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]