RnoEX0026011 @ rn6
Exon Skipping
Gene
ENSRNOG00000032895 | Cyp4f4
Description
cytochrome P450, family 4, subfamily f, polypeptide 4 [Source:RGD Symbol;Acc:708363]
Coordinates
chr7:14891459-14896479:+
Coord C1 exon
chr7:14891459-14891657
Coord A exon
chr7:14896211-14896264
Coord C2 exon
chr7:14896352-14896479
Length
54 bp
Sequences
Splice sites
3' ss Seq
ATCACCCTTGTTCATGTCAGCTT
3' ss Score
5.66
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
Exon sequences
Seq C1 exon
GATGCCACAGTTGGACCTGTCCTGGCTGGGACTGAGGCTGGAGACATCCTTACCATGGCTGCTTTTGCTGCTGATCGGAGCTTCCTGGCTCTTGGTCCGTGTCTTGACTCAGACCTATATCTTCTACAGAACATATCAACATCTTTGTGATTTCCCTCAACCACCCAAATGGAATTGGTTCTTGGGTCACCTGGGCATG
Seq A exon
CTTCGGTTGCCCTAAAGGAAGTAATCTTCTACAGCTTTCTGAAACCCTGGTTGG
Seq C2 exon
GGGATGGACTCCTGTTGAGCGATGGTGACAAGTGGAGCTGCCACCGCCGCATGCTGACACCTGCCTTCCACTTCAACATCCTGAAACCCTATGTGAAGATTTTCAACGACAGCACCAACATCATGCAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000032895_MULTIEX1-2/2=C1-C2
Average complexity
C2*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=PU(3.0=21.2)
A:
PF0006717=p450=FE(10.2=100)
C2:
PF0006717=p450=FE(23.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCTTGGTCCGTGTCTTGAC
R:
CACCATCGCTCAACAGGAGTC
Band lengths:
139-193
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]