MmuEX0013397 @ mm10
Exon Skipping
Gene
ENSMUSG00000073424 | Cyp4f15
Description
cytochrome P450, family 4, subfamily f, polypeptide 15 [Source:MGI Symbol;Acc:MGI:2146921]
Coordinates
chr17:32686059-32698043:+
Coord C1 exon
chr17:32686059-32686257
Coord A exon
chr17:32692416-32692469
Coord C2 exon
chr17:32697773-32698043
Length
54 bp
Sequences
Splice sites
3' ss Seq
ACCATCCTTGTTCATGTCAGCTT
3' ss Score
6.1
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
Exon sequences
Seq C1 exon
GATGCCACAGTTGGACCTGTCTTGGCTGGGACTGAGGCTGGAGGCATCCTCACCATGGCTGCTTTTGCTGCTGATCGGAGCTTCCTGGCTCTTGGCCCGTGTCCTGACTCAGACCTATATCTTCTACAGAACATATCATCATCTTTGTGATTTCCCTCAACCCCCCAAATGGAATTGGTTCTTGGGTCACCTAGGCATG
Seq A exon
CTTCGGTAGCCCTAAAGGAAGTAGTCTTCTACAGTTTCCTGAAACCTTGGCTGG
Seq C2 exon
GAATCCCAGTGAGTATATTTCTGCCATCTTGGAGCTCAGTGCCTTAGTGACCAAACGGTACCACCAGCTGCTTCTACACATAGACTCACTCTATCAGCTCACCTGTAGTGGGCGGCGCTTCCACAAGGCCTGCCACCTGGTGCACAGCTTCACAGATGCTGTCATCCAGGATCGACGACGTACTCTCCCCAGTAAGCATGAGGATGATGTCCTCAAGGCCAAGGCTAAGTCCAAAACTCTGGATTTCATTGATGTGCTGCTGCTGAGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000073424_MULTIEX1-2/5=C1-5
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=PU(3.0=20.9)
A:
PF0006717=p450=FE(3.9=100)
C2:
PF0006717=p450=FE(19.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGTGTCCTGACTCAGACCTA
R:
CACTGAGCTCCAAGATGGCAG
Band lengths:
144-198
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types