Special

MmuEX0013398 @ mm10

Exon Skipping

Gene
Description
cytochrome P450, family 4, subfamily f, polypeptide 15 [Source:MGI Symbol;Acc:MGI:2146921]
Coordinates
chr17:32686059-32698043:+
Coord C1 exon
chr17:32686059-32686257
Coord A exon
chr17:32692558-32692685
Coord C2 exon
chr17:32697773-32698043
Length
128 bp
Sequences
Splice sites
3' ss Seq
CTGTCATAATGCCCTACCAGGGG
3' ss Score
5.6
5' ss Seq
CATGTGAGT
5' ss Score
7.83
Exon sequences
Seq C1 exon
GATGCCACAGTTGGACCTGTCTTGGCTGGGACTGAGGCTGGAGGCATCCTCACCATGGCTGCTTTTGCTGCTGATCGGAGCTTCCTGGCTCTTGGCCCGTGTCCTGACTCAGACCTATATCTTCTACAGAACATATCATCATCTTTGTGATTTCCCTCAACCCCCCAAATGGAATTGGTTCTTGGGTCACCTAGGCATG
Seq A exon
GGGATGGGCTCTTGCTGAGTGATGGTGACAAGTGGAGCAGCCACCGTCGCATGTTGACACCTGCTTTCCATTTCAACATCCTAAAACCCTATGTGAAGATTTTCAATGACAGCACCAACATAATGCAT
Seq C2 exon
GAATCCCAGTGAGTATATTTCTGCCATCTTGGAGCTCAGTGCCTTAGTGACCAAACGGTACCACCAGCTGCTTCTACACATAGACTCACTCTATCAGCTCACCTGTAGTGGGCGGCGCTTCCACAAGGCCTGCCACCTGGTGCACAGCTTCACAGATGCTGTCATCCAGGATCGACGACGTACTCTCCCCAGTAAGCATGAGGATGATGTCCTCAAGGCCAAGGCTAAGTCCAAAACTCTGGATTTCATTGATGTGCTGCTGCTGAGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000073424_MULTIEX1-3/5=C1-5
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact

ORF disruption upon sequence exclusion

No structure available
Features
Disorder rate (Iupred):
  C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):

C1:
PF0006717=p450=PU(3.0=20.9)
A:
PF0006717=p450=FE(9.1=100)
C2:
PF0006717=p450=FE(19.4=100)


Main Inclusion Isoform:


Main Skipping Isoform:
NA


Other Inclusion Isoforms:


Other Skipping Isoforms:
NA
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGTTGGACCTGTCTTGGCTG
R:
TGGTCACTAAGGCACTGAGCT
Band lengths:
245-373
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]


SPECIAL DATASETS

  • Pre-implantation embryo development
  • Ribosome-engaged transcriptomes of neuronal types
  • Neural differentiation time course
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types