RnoEX6030775 @ rn6
Exon Skipping
Gene
ENSRNOG00000032895 | Cyp4f4
Description
cytochrome P450, family 4, subfamily f, polypeptide 4 [Source:RGD Symbol;Acc:708363]
Coordinates
chr7:14896211-14899049:+
Coord C1 exon
chr7:14896211-14896264
Coord A exon
chr7:14896352-14896479
Coord C2 exon
chr7:14898928-14899049
Length
128 bp
Sequences
Splice sites
3' ss Seq
CTGCCGTGATGCCCTACCAGGGG
3' ss Score
5.66
5' ss Seq
CACGTGAGT
5' ss Score
9.3
Exon sequences
Seq C1 exon
CTTCGGTTGCCCTAAAGGAAGTAATCTTCTACAGCTTTCTGAAACCCTGGTTGG
Seq A exon
GGGATGGACTCCTGTTGAGCGATGGTGACAAGTGGAGCTGCCACCGCCGCATGCTGACACCTGCCTTCCACTTCAACATCCTGAAACCCTATGTGAAGATTTTCAACGACAGCACCAACATCATGCAC
Seq C2 exon
GCCAAATGGCAGGACCTGGCCTCAGGAGGCAGCGCCCGTCTGGACATGTTTAAGAACATCAGCCTGATGACCTTGGACAGTCTGCAGAAATGTGTCTTCAGTTTTGATAGCAACTGCCAGGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000032895-'5-7,'5-6,6-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(10.2=100)
A:
PF0006717=p450=FE(23.7=100)
C2:
PF0006717=p450=FE(22.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCGGTTGCCCTAAAGGAAGT
R:
TCCTGGCAGTTGCTATCAAAACT
Band lengths:
175-303
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]