BtaEX6037211 @ bosTau6
Exon Skipping
Description
Bos taurus cytochrome P450, family 4, subfamily F, polypeptide 2 (CYP4F2), mRNA. [Source:RefSeq mRNA;Acc:NM_001035042]
Coordinates
chr7:8553012-8556210:+
Coord C1 exon
chr7:8553012-8553156
Coord A exon
chr7:8555937-8555990
Coord C2 exon
chr7:8556083-8556210
Length
54 bp
Sequences
Splice sites
3' ss Seq
ATGGTCCTCATTCATGTCAGCTG
3' ss Score
5.53
5' ss Seq
TAGGTGAGT
5' ss Score
8.83
Exon sequences
Seq C1 exon
GTCCCCCCCACGGAGCAGGGCATGAGCAAATTAACTGAGCTGGTGGCCAAATACTCCCAAGGATTTAGGATCTGGATGGGTCCCATCACCCCCATCATCGTTTTCTGCCACCCTGACTTGATCCGGATCGTCGCCAATGCTTCAG
Seq A exon
CTGCTGTCGCACCAAAGGACGTGATCTTCTATGAAGTTCTAAAGCCCTGGCTAG
Seq C2 exon
GGGATGGGCTCCTGCTGAGTGCTGGTGACAAGTGGAGCAGGCACCGTCGCATGCTGACACCTGCCTTCCACTTCAACATCCTGAAGCCCTATATGAAGATTTTCACCAAGAGCACAGACATCATGCAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000025748-'4-3,'4-2,5-3=AN
Average complexity
A_S
Mappability confidence:
88%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(10.3=100)
A:
PF0006717=p450=FE(3.9=100)
C2:
PF0006717=p450=FE(9.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCTGGTGGCCAAATACTCC
R:
CTCCACTTGTCACCAGCACTC
Band lengths:
146-200
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]