Special

BtaEX0001275 @ bosTau6

Exon Skipping

Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E1BHD5]
Coordinates
chr7:8508473-8513652:+
Coord C1 exon
chr7:8508473-8508670
Coord A exon
chr7:8510494-8510638
Coord C2 exon
chr7:8513525-8513652
Length
145 bp
Sequences
Splice sites
3' ss Seq
GGCCCTTACCTTGCTTACAGGTT
3' ss Score
9.29
5' ss Seq
CAGGTACCC
5' ss Score
8.63
Exon sequences
Seq C1 exon
ATGCTGGAGCTGAGCCTGTCTTGGCTGGGACTCGGGCCAGTAGCAGCCTCCCCATGGCTGCTGCTGCTGCTGGTCGGGGCTTCCTGGATCCTGGCCCACGTCCTGGCCTGGACCTACACCTCCTACAACAACTCTCTCCGCCTCCGATGCTTCCCGCAGCCCCCAAAACGTAACTGGTTCTTGGGTCACCTGGGCCTG
Seq A exon
GTTCCCCCCACGGAGCAGGGCTTGAGCAAAGTAACTCAGCTGGTGACCAACTACCCTCAGGGTTACTTGATGTGGATGGGCCCCATCATCCCCCTGGTCATTTTCTGCCACCCTGACTTGATCCGGACTTTTGCCAGTGCTTCAG
Seq C2 exon
GGGATGGGCTCCTGCTGAGTGCTGGTGACAAGTGGAGCAGCCACCGTCGCATGCTGACACCTGCCTTCCACTTCAACATCCTGAAGCCCTATATGAAGATTTTCACCAAGAGCGCAGACATCATGCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000039319_MULTIEX1-1/2=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact

ORF disruption upon sequence exclusion

No structure available
Features
Disorder rate (Iupred):
  C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):

C1:
PF0006717=p450=PU(3.0=21.2)
A:
PF0006717=p450=FE(10.3=100)
C2:
PF0006717=p450=FE(9.1=100)


Main Inclusion Isoform:


Main Skipping Isoform:
NA


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
NA
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
HIGH PSI
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCCTGGATCCTGGCCCA
R:
ATGATGTCTGCGCTCTTGGTG
Band lengths:
243-388
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]


SPECIAL DATASETS

  • Pre-implantation embryo development