BtaINT0007895 @ bosTau6
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E1BHD5]
Coordinates
chr7:8508473-8510638:+
Coord C1 exon
chr7:8508473-8508670
Coord A exon
chr7:8508671-8510493
Coord C2 exon
chr7:8510494-8510638
Length
1823 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
3' ss Seq
GGCCCTTACCTTGCTTACAGGTT
3' ss Score
9.29
Exon sequences
Seq C1 exon
ATGCTGGAGCTGAGCCTGTCTTGGCTGGGACTCGGGCCAGTAGCAGCCTCCCCATGGCTGCTGCTGCTGCTGGTCGGGGCTTCCTGGATCCTGGCCCACGTCCTGGCCTGGACCTACACCTCCTACAACAACTCTCTCCGCCTCCGATGCTTCCCGCAGCCCCCAAAACGTAACTGGTTCTTGGGTCACCTGGGCCTG
Seq A exon
GTGAGTGTGGGCAGCAGATTGAGTCTGGGAAATCAAGGTAGATGGACTTCCTGGAGGTCAGGAATGGGGCTCAGGTTTGAGCTGGGGTCTAGGACAGCAGAGAAGACAGGGAAGCCAAGGAACCCCCTCTTCCCTCACTCATTCATTCCTCTACTCTGCCATCGAGACGTTCTCCACATCCTGTCCTTCCAGTCCTAGCCTGCTTTCGGGTCCATTCCCTGTCTGACTTCCACATGTTATGCACCTGATAAGATTCACTGTCCAGCGTCTGCTCTGCACAGGGCCCATATCCTTGTGTCTTGTTCTCAGCCACAGCTTTCCTAAGGGAAATAACTACCACCTCCCCATTCCCACCTACAGGAGCACAGCTGCCCACCCCTTGCCCTTTCCAGGACCCCTTCCTCTAATTTAACTATCATCCCTCCCCCAAAGATGTCCCAAAGGGCCTGTTGCCCAATCTAGATAAAGTCAGCTACTCACTTCCTCTTTCAAAAGCCTTCTTAGACCTACCCCACCTCCACACCTGCCTAGATTGTGCCCCAGACTGATACTTATGACTTGACCCCACTCATGATTAATGAAACAGGTAATCATCCAATTACTTAGTAACCACTTCCCAATTTGATGATAGTTTGGGGGAGCAGACACTACAGTGCCCAGTCCAGGACTGGAGCGATGTAAGCGCTCAAAATAAATGCTTGATGACCGAGGTGATCAACTTGCCATCACCTCCCTCAGTCAAGGTCAAAGGGATTATATTCAGCTCCCCCTATCTCCCAGACAACTTTTCCTTTCATGCCTGGGATGAGAACTACAAGTTGGGGGAGGACTTATTGCAATTACTATTCATTAAGGCAAAGTTCACAGTGGAGGGTGTCCAAAGCTCACCACAAAGATTTGCTGAGGTTCCAGATCTTCAAATGGTCTCAGCGAGCCCTGGAAGCAGCAGGAATGTTACAAAGTTCTCCAGTTCTGCCTTCCCTGCCTCCAGGGCTTGGCTGTGGGGACCAGTTCAGTCACTCTTCTGTGTGACTTCAGCTGAGCCACGCTCCCTCTCTGGGCCAGTCTCATCTAGTGCTTTGAATCCTCACCTTAGGGCCTTCGGATAGGGGAGCAAGTCACAAAGGTGAAAGTGTTTTATGTCACCTGCCTAGAGTACCTGAGGGTATTTGTCGGGTTTGAATGGAGCATCGTGAGGGAGAGGGTGCTTCACTAGGAGGCTACCTGCACTTCTTCCCCTTTGAGGGGATATGGCATCAGTTACTTCTTTTGAAAATGTCACAATTGAAAGGCATGCCCATAACTTGCAGAGAAACAGACAGGATGCACTCTGCACCGAGCCTGATCAGTGAAGGTTATAGTCCATGTTCCTCCTTTGGTTAATAGGCAGAGTTCATGTCTGTCCCTGGGGGATGGCCAGGGCTATAAGGTCAGAGGTCTGCAGAACCCTTGCCATGCAAGAAATCAGAAGCCATGTGGAGCAGGAAAAACATGGGAGGGTGTTGGACCAAAGCCCATTCATCCTGCTACCCACAAAGCTGCCCACTGAGGATCTCCTTCTTAGATTGCCCTTGCACTGGGACCACTCCCAGGACAAGAAAAATGTGTCTTCTCAAGCCAAGATTTGCCTCCCTGTGGGCAGAGAGCCTGTCTTCTCCCTGTGCCCTGGGATAGACCCTTGGGACTTGGAGAGCCTCCAGGTGCCTCCTTCCCCAAGAGGGAAGGAGGAAGCAGAGATTCCCTCCATCTGTATAGGATCCCACACTCTGTCCACCTCAGTGGACTCTCCTTCTGTGAAGTGATGGCCCTTACCTTGCTTACAG
Seq C2 exon
GTTCCCCCCACGGAGCAGGGCTTGAGCAAAGTAACTCAGCTGGTGACCAACTACCCTCAGGGTTACTTGATGTGGATGGGCCCCATCATCCCCCTGGTCATTTTCTGCCACCCTGACTTGATCCGGACTTTTGCCAGTGCTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000039319:ENSBTAT00000036382:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=PU(3.0=21.2)
A:
NA
C2:
PF0006717=p450=FE(10.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGCTGGAGCTGAGCCTGTC
R:
TGAAGCACTGGCAAAAGTCCG
Band lengths:
342-2165
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]