BtaEX6037217 @ bosTau6
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1MCD3]
Coordinates
chr7:8485216-8490669:-
Coord C1 exon
chr7:8490442-8490669
Coord A exon
chr7:8488403-8488547
Coord C2 exon
chr7:8485216-8485269
Length
145 bp
Sequences
Splice sites
3' ss Seq
GGCCCTTACTTTGCTTGCAGTAC
3' ss Score
6.77
5' ss Seq
CAGGTACCC
5' ss Score
8.63
Exon sequences
Seq C1 exon
GACTCACTCTGCACCCCATCTGACCACAGGATGCTGGAGCTCAGCCTATCCTGGCTGGGACTCAGGCCGGTGGCAGCCTCTCCGTGGCTGCTGCTGGTGCTGGTTGGGGCCTCCTGGATCCTGGCCCACGTCCTGGCCTGGACTTACACCTTCTACAACAACTCTCGCCACCTTCAGTGTTTCCCACAACCACCAAAACGCAACTGGTTCTTGGGTCACATGGGCCAG
Seq A exon
TACCCCCCCACGGAGAAGGGCTTGCGGGACTTCACCCAGCTGGTAGCCAACTACCCCCAAGGATTTAGGATCTGCCTTGGCCCAGCCATTCCCATCATCATTTTCTGCCACCCTGACATGATCCGGATTGTCGCCAATGCCTCAG
Seq C2 exon
CTGCTGCTGCACCCAAGGATGTGATCTTCTATGACTTTCTGAAGCCTTGGCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000038549-'0-2,'0-1,2-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=PU(3.0=19.7)
A:
PF0006717=p450=FE(10.4=100)
C2:
PF0006717=p450=FE(3.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCACTCTGCACCCCATCTGA
R:
GATCACATCCTTGGGTGCAGC
Band lengths:
252-397
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]