BtaEX6038478 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000000595 | FBN3
Description
fibrillin 3 [Source:HGNC Symbol;Acc:HGNC:18794]
Coordinates
chr7:18051789-18053181:-
Coord C1 exon
chr7:18052957-18053181
Coord A exon
chr7:18052650-18052775
Coord C2 exon
chr7:18051789-18051917
Length
126 bp
Sequences
Splice sites
3' ss Seq
TTTGTACTCCCGTGCTGCAGATG
3' ss Score
7.79
5' ss Seq
CAGGTACGT
5' ss Score
10.65
Exon sequences
Seq C1 exon
ACATGCGCCTGGAGCTTTGTTTCCTGCGTTGGGAGGAGGACGAGTGTGGGGCTGCCCTGCTGGGCAAGTACCGGATGGATGTCTGCTGCTGTACTGTGGGGGCCGCATGGGGCACCACATGCGAGGCGTGCCCTGAGCCCGAGTCCCCGGCTTTTACCAGCCTGTGTCCCCGGGGGCTGGGCTTTGCCAGCCGGGACTTCCTGTCAGGCCGTCCCTTCTATAAAG
Seq A exon
ATGTGAATGAGTGCAAAGCCTTCCCTGGGCTGTGCGCCCATGGCACGTGCCGCAACACTGTGGGCAGCTTCCGTTGCTCCTGTGCGGGGGGCTTCGCCCTGGATACCCAGGAAAGGAACTGCACAG
Seq C2 exon
ACATCGACGAGTGCCGCATCTCCCCTGACCTCTGTGGCCAGGGCACCTGTGTCAACACCCCGGGCAGCTTTGAGTGCGAGTGTCTCCGTGGCTACGAGAGTGGCTTCATGCTGATGAAGAACTGCATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000595-'25-28,'25-27,26-28=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0068312=TB=WD(100=55.3),PF0764510=EGF_CA=PU(0.1=0.0)
A:
PF0764510=EGF_CA=WD(100=95.3),PF0764510=EGF_CA=PU(0.1=0.0)
C2:
PF0764510=EGF_CA=WD(100=95.5),PF0764510=EGF_CA=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCAAGTACCGGATGGATGTC
R:
AGACACTCGCACTCAAAGCTG
Band lengths:
248-374
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]