GgaEX6050686 @ galGal3
Exon Skipping
Gene
ENSGALG00000014686 | FBN2
Description
NA
Coordinates
chrZ:55706181-55707326:-
Coord C1 exon
chrZ:55707099-55707326
Coord A exon
chrZ:55706672-55706800
Coord C2 exon
chrZ:55706181-55706207
Length
129 bp
Sequences
Splice sites
3' ss Seq
CTCTTTTTTTTTTTTTTTAATAG
3' ss Score
-0.08
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
Exon sequences
Seq C1 exon
ATATTCGCATGGAGCAGTGTTACCTGAAATGGGATGAAGATGAATGCATTCAGTCTGTACCTGGCAAATTTCGTATGGATGCCTGCTGCTGTGCTGTGGGTGCTGCCTGGGGCTCTGACTGTGAGGAGTGTCCAAAGCCTGGCACAAAGGAGTATGAGGCTCTGTGCCCCAGAGGTCCTGGCTTTTCCAACAGAGGAGATATTCTAACTGGCAGACCATTTTATAAAG
Seq A exon
TAGATATCAATGAGTGCAAGGTGTTCCCTGGTATGTGCATGAATGGTAAATGCAGGAACACAATTGGAAGTTTCAAATGTAGGTGTAACAGCGGGTTTGCTTTAGATATGGAGGAAAGAAATTGTACAG
Seq C2 exon
GTTTAGTATTTTGTTATTTACTGCCTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014686-'29-34,'29-32,30-34=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0068312=TB=WD(100=54.5)
A:
PF0764510=EGF_CA=WD(100=93.2)
C2:
PF0764510=EGF_CA=PU(13.2=50.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]