GgaEX6050686 @ galGal4
Exon Skipping
Gene
ENSGALG00000014686 | fbn2
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E1C3A6]
Coordinates
chrZ:56642923-56645921:-
Coord C1 exon
chrZ:56645694-56645921
Coord A exon
chrZ:56645267-56645392
Coord C2 exon
chrZ:56642923-56643051
Length
126 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTTTTTTTTTAATAGATA
3' ss Score
9.95
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
Exon sequences
Seq C1 exon
ATATTCGCATGGAGCAGTGTTACCTGAAATGGGATGAAGATGAATGCATTCAGTCTGTACCTGGCAAATTTCGTATGGATGCCTGCTGCTGTGCTGTGGGTGCTGCCTGGGGCTCTGACTGTGAGGAGTGTCCAAAGCCTGGCACAAAGGAGTATGAGGCTCTGTGCCCCAGAGGTCCTGGCTTTTCCAACAGAGGAGATATTCTAACTGGCAGACCATTTTATAAAG
Seq A exon
ATATCAATGAGTGCAAGGTGTTCCCTGGTATGTGCATGAATGGTAAATGCAGGAACACAATTGGAAGTTTCAAATGTAGGTGTAACAGCGGGTTTGCTTTAGATATGGAGGAAAGAAATTGTACAG
Seq C2 exon
ATATTGATGAATGCCGGATCTCCCCAGACTTATGTGGAAGTGGTACTTGTGTTAATACTCCTGGAAGCTTTGAGTGTGAGTGCTTTGATGGTTATGAAAGTGGATTCATGATGATGAAGAACTGTATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014686-'31-34,'31-32,32-34=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0068312=TB=WD(100=54.5),PF0764510=EGF_CA=PU(0.1=0.0)
A:
PF0764510=EGF_CA=WD(100=95.3),PF0764510=EGF_CA=PU(0.1=0.0)
C2:
PF0764510=EGF_CA=WD(100=95.5),PF0764510=EGF_CA=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCGCATGGAGCAGTGTTACC
R:
ATAAGTCTGGGGAGATCCGGC
Band lengths:
258-384
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]