BtaEX6038490 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000000595 | FBN3
Description
fibrillin 3 [Source:HGNC Symbol;Acc:HGNC:18794]
Coordinates
chr7:18035278-18040739:-
Coord C1 exon
chr7:18040614-18040739
Coord A exon
chr7:18035801-18035926
Coord C2 exon
chr7:18035278-18035427
Length
126 bp
Sequences
Splice sites
3' ss Seq
AATTCCTCCCTCCCTTGCAGACA
3' ss Score
10.99
5' ss Seq
TGGGTATGA
5' ss Score
5.85
Exon sequences
Seq C1 exon
ACATTGACGAATGCCAGGAGCTGCCAGGGCTGTGCCAGGGGGGCAACTGTGTCAACACCTTTGGCAGCTTCCAGTGCGAGTGCCCACCCGGCTACCACCTCAATGAGGATACCCGCATCTGTGAGG
Seq A exon
ACATCGACGAATGCTCTGCACACTCAGGCATCTGTGGCCCTGGAACCTGCTATAACACTCTGGGGAACTACACTTGTGTCTGCCCTGTGGAATACCTGCAAGTCAACGGTGGCAATAACTGCATGG
Seq C2 exon
ACATGAGGAAGAGCGTCTGCTTCCGGCATTACAACAGCACATGTCAGAATGAGCTGGCCTTTAACGTGACCCGGAAGATGTGCTGCTGTTCCTACAACATTGGCCAGGCCTGGAATAGACCCTGTGAGGCCTGCCCGACCCCCGCCAGTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000595-'40-44,'40-43,41-44=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF126622=cEGF=PU(83.3=46.5)
A:
PF126622=cEGF=PD(12.5=7.0)
C2:
PF0068312=TB=PU(86.4=74.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTGACGAATGCCAGGAGCTG
R:
AGGCCTCACAGGGTCTATTCC
Band lengths:
256-382
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]