DreEX6097169 @ danRer10
Exon Skipping
Gene
ENSDARG00000098237 | FBN3
Description
fibrillin 3 [Source:HGNC Symbol;Acc:HGNC:18794]
Coordinates
chr22:4096029-4099917:-
Coord C1 exon
chr22:4099792-4099917
Coord A exon
chr22:4096407-4096532
Coord C2 exon
chr22:4096029-4096178
Length
126 bp
Sequences
Splice sites
3' ss Seq
TTGTGTGTCATTTTTGTCAGATA
3' ss Score
7.77
5' ss Seq
TGGGTACCA
5' ss Score
0.02
Exon sequences
Seq C1 exon
ACATTGACGAGTGTCAGGAGCTGCCGGGTCTCTGTCAGGGTGGAAACTGTGTGAACACGTTCGGCAGTTTCCAGTGTGAGTGTCCCGCCGGATACTATCTCAACGAGGAGACGCGCATCTGCGAAG
Seq A exon
ATATTGATGAATGTACTGCTCACATTGGCATCTGTGGTCCGGGCACCTGCTACAACACACTGGGCAACTACACCTGCGTCTGTCCTCCAGAATACATGCAGGTCAATGGAGGAAACAACTGCATGG
Seq C2 exon
ACATGAGGAAGAGTGTGTGTTACCGTAACTTCAACGACACCTGTGAAAACGAGCTCTCCTTCAACATGACCAAAAAGATGTGCTGCTGCGCCTACAACGTGGGTAAAGCCTGGAACCGGCCCTGCGAGGCCTGTCCTACCCCCGCCACCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000098237-'22-21,'22-20,23-21=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=WD(100=95.3),PF0764510=EGF_CA=PU(0.1=0.0)
A:
PF0764510=EGF_CA=WD(100=100.0)
C2:
PF0764510=EGF_CA=PD(0.1=0.0),PF0068312=TB=PU(86.4=74.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGTCTCTGTCAGGGTGGAAA
R:
GGGGTAGGACAGGCCTCG
Band lengths:
243-369
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]