GgaEX1066049 @ galGal4
Exon Skipping
Gene
ENSGALG00000014686 | fbn2
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E1C3A6]
Coordinates
chrZ:56598589-56621538:-
Coord C1 exon
chrZ:56621413-56621538
Coord A exon
chrZ:56620829-56620954
Coord C2 exon
chrZ:56598589-56598714
Length
126 bp
Sequences
Splice sites
3' ss Seq
TGTTTTCAACTATTTTGCAGATA
3' ss Score
9.11
5' ss Seq
TGGGTATGT
5' ss Score
7.43
Exon sequences
Seq C1 exon
ACATTGATGAATGTCAGGAGCTGCCAGGTCTCTGCCAAGGTGGAAATTGCATCAATACTTTTGGCAGCTTCCAATGTGAATGTCCAAAAGGCTACTACCTCAGTGAAGAGACAAGAATCTGTGAAG
Seq A exon
ATATTGACGAGTGTGTTGCACATCCTGGTGTCTGTGGTCCTGGCACCTGCTACAATACCCTGGGAAACTACACCTGCATTTGTCCTCCTGAATATATGCAAGTCAATGGAGGACATAACTGTATGG
Seq C2 exon
ATATTGATGAATGTAAGGTCATGCCAAACCTTTGTAGACATGGACAATGTATCAACACTATGGGCTCATTCCGCTGCTTTTGCAAAGTTGGCTATACAACTGACATAAGCAGCACATCTTGTGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014686_MULTIEX1-5/22=4-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=WD(100=95.3),PF0764510=EGF_CA=PU(0.1=0.0)
A:
PF0764510=EGF_CA=WD(100=95.3)
C2:
PF0764510=EGF_CA=WD(100=95.3),PF0764510=EGF_CA=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGAATGTCAGGAGCTGCCAG
R:
ACAAGATGTGCTGCTTATGTCAGT
Band lengths:
242-368
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]