BtaEX6038496 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000000595 | FBN3
Description
fibrillin 3 [Source:HGNC Symbol;Acc:HGNC:18794]
Coordinates
chr7:18024564-18027036:-
Coord C1 exon
chr7:18026920-18027036
Coord A exon
chr7:18025336-18025464
Coord C2 exon
chr7:18024564-18024683
Length
129 bp
Sequences
Splice sites
3' ss Seq
GACCCATCTTCCCTCTGCAGACA
3' ss Score
10.77
5' ss Seq
TAGGTGAGT
5' ss Score
8.83
Exon sequences
Seq C1 exon
ATGTCGACGAGTGTGACCGGCAGCCGTGTGGAAATGGGACCTGCAAGAACATTGTCGGCTCCTACAACTGCCTCTGCTTCCCCGGCTTTGTGGCAGCACACAACGGAGATTGTGTGG
Seq A exon
ACATGGATGAGTGCACCACCATGGTGGGGCAGGTGTGCCGATTTGGCCAGTGCCTCAACACGGCTGGCTCCTTCCACTGCCTCTGCAAGGATGGCTTTGAGCTCACAAGTGATGGGAAGAACTGCATAG
Seq C2 exon
ACACCAACGAGTGTCTCAGCCTTCCGGGAACCTGCCTGCCAGGCACTTGCCAGAACCTCGAGGGCTCCTTCCGCTGCATTTGTCCCCCAGGCTTCCAGGTGCAGAGCGACCATTGTGTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000595-'47-52,'47-51,48-52=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF062476=Plasmod_Pvs28=PD(1.6=5.0),PF0764510=EGF_CA=WD(100=95.0),PF0764510=EGF_CA=PU(0.1=0.0)
A:
PF0764510=EGF_CA=WD(100=95.5),PF0764510=EGF_CA=PU(0.1=0.0)
C2:
PF0764510=EGF_CA=WD(100=95.1),PF0764510=EGF_CA=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGTCGACGAGTGTGACCGG
R:
GACACAATGGTCGCTCTGCA
Band lengths:
236-365
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]