BtaEX6038499 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000000595 | FBN3
Description
fibrillin 3 [Source:HGNC Symbol;Acc:HGNC:18794]
Coordinates
chr7:18022243-18023439:-
Coord C1 exon
chr7:18023314-18023439
Coord A exon
chr7:18022472-18022624
Coord C2 exon
chr7:18022243-18022308
Length
153 bp
Sequences
Splice sites
3' ss Seq
CTGGGGAATCACCCCCACAGACA
3' ss Score
5.11
5' ss Seq
GTGGTGAGG
5' ss Score
6.13
Exon sequences
Seq C1 exon
ACATCGACGAGTGCTCCGAAGAGCCCAACCTGTGCCTTTTTGGCACCTGTACCAACAGTGCCGGAAGCTTCGATTGCCTCTGCCCGCCTGACTTTGTCCTGTCTGACAACGGGCACCGTTGCTTTG
Seq A exon
ACACACGGCAAAGTTTCTGCTTTACCCATTTCGAGGCCGGAAAGTGCTCAGTACCCAAAGCTTTCAACACCACCAAGGCCCGGTGCTGTTGTAGCCAGAGGCCCGGCGAGGGCTGGAACGACCCCTGCGAGCTGTGTCCCCAGGAAGGCAGTG
Seq C2 exon
TCGCCTTTCAGGAGCTGTGTCCCTTTGGCCACGGGGCAGTCCCAGGCCCAGATGACTCCAGGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000595-'50-56,'50-54,51-56=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=WD(100=95.3)
A:
PF0068312=TB=PU(86.4=73.1)
C2:
PF0068312=TB=PD(11.4=21.7),PF0764510=EGF_CA=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCGACGAGTGCTCCGAAGAG
R:
CTTCCCTGGAGTCATCTGGGC
Band lengths:
190-343
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]