GgaEX1024608 @ galGal4
Exon Skipping
Gene
ENSGALG00000000327 | FBN3
Description
fibrillin 3 [Source:HGNC Symbol;Acc:HGNC:18794]
Coordinates
chr28:383088-384277:+
Coord C1 exon
chr28:383088-383213
Coord A exon
chr28:383584-383736
Coord C2 exon
chr28:384212-384277
Length
153 bp
Sequences
Splice sites
3' ss Seq
ATTTCCCTGTCCTCCTACAGATA
3' ss Score
11.85
5' ss Seq
ATGGTAGGT
5' ss Score
8.6
Exon sequences
Seq C1 exon
ATATCAATGAATGTGAAGAGGAGCCCAACATCTGCCTCTTCGGGACATGCACCAATACTCCTGGCAGCTTCCAGTGTGTCTGTCCCCCTGGCTTTGTGCTGTCTGATAATGGCCGGCGGTGCTTTG
Seq A exon
ATACTCGCCAGAGCTTCTGCTTCACTCGCTTTGACAATGGGAAGTGCTCTGTCCCCAAGGCCTTCAACACCACCAAGGCTCGGTGCTGCTGCAGCAAGATGCCAGGAGAAGGCTGGGGAGACCCATGTGAGCTGTGCCCACAAGAAGGAAATG
Seq C2 exon
TCGCCTTCCAGGAGCTGTGTCCATATGGCCACGGAGCCATCCCAGGTCCAGGTGACACCCGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000327_MULTIEX2-43/54=42-44
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=WD(100=95.3)
A:
PF0068312=TB=PU(86.4=73.1)
C2:
PF0068312=TB=PD(11.4=21.7),PF0764510=EGF_CA=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGAATGTGAAGAGGAGCCCA
R:
CTTCTCGGGTGTCACCTGGA
Band lengths:
186-339
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]