BtaEX6038682 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000017280 | C3
Description
Bos taurus complement component 3 (C3), mRNA. [Source:RefSeq mRNA;Acc:NM_001040469]
Coordinates
chr7:18994225-18994789:+
Coord C1 exon
chr7:18994225-18994315
Coord A exon
chr7:18994430-18994532
Coord C2 exon
chr7:18994663-18994789
Length
103 bp
Sequences
Splice sites
3' ss Seq
AGACTGTCCCTGCATCGCAGGTT
3' ss Score
6.71
5' ss Seq
CCGGTACCT
5' ss Score
5.7
Exon sequences
Seq C1 exon
TGCTTCCCAGTTTTGAGGTCCAACTAGAGCCTGAAGAGAAATTCTACTACATTGATGACCCAGATGGCCTGAAGGTCAACATCATTGCCAG
Seq A exon
GTTCTTGTACGGGGAACAGGTGGACGGAACAGCTTTCGTCATCTTTGGGGTCCAGGATGGCGACCGGAGAATTTCATTGACTCACTCCCTCACCCGTGTTCCG
Seq C2 exon
ATCAACGATGGTAATGGGGAGGCCATACTGAAACGTCAGGTTTTGCTGAATGGAGTACAGCCCTCCCGAGCTGATGCCCTGGTGGGCAAGTCCATATATGTGTCCGCCACCGTCATCTTGCAATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000017280-'9-9,'9-8,10-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTTCCCAGTTTTGAGGTCC
R:
CTGATTGCAAGATGACGGTGG
Band lengths:
218-321
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]