RnoEX6038521 @ rn6
Exon Skipping
Gene
ENSRNOG00000046834 | C3
Description
complement C3 [Source:RGD Symbol;Acc:2232]
Coordinates
chr9:9724239-9724850:+
Coord C1 exon
chr9:9724239-9724329
Coord A exon
chr9:9724414-9724516
Coord C2 exon
chr9:9724724-9724850
Length
103 bp
Sequences
Splice sites
3' ss Seq
CAAGTCTCCTTGTCTCTCAGATT
3' ss Score
8.01
5' ss Seq
CTGGTATTG
5' ss Score
3.14
Exon sequences
Seq C1 exon
TGCTGCCCAGTTTCGAAGTCCTGGTGGAGCCTACAGAGAAATTTTATTACATCGATGACCCAAAGGGCCTGGAAGTTTCCATCACAGCCAG
Seq A exon
ATTCCTGTATGGGAAGAACGTGGACGGGACAGCTTTCGTGATCTTTGGGGTCCAGGATGAGGATAAGAAGATTTCTCTGGCCCAGTCCCTCACCCGCGTGCTG
Seq C2 exon
ATCGAGGATGGTTCAGGGGAGGCAGTGCTCAGCCGAAAAGTGCTGATGGACGGGGTACGGCCCTCCAGCCCAGAAGCCCTAGTGGGGAAGTCCCTGTACGTCTCTGTCACTGTTATCCTGCACTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000046834-'9-10,'9-9,10-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTGCCCAGTTTCGAAGTC
R:
CTGAGTGCAGGATAACAGTGACA
Band lengths:
218-321
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]