BtaEX6040261 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000020780 | SBNO2
Description
Bos taurus strawberry notch homolog 2 (Drosophila) (SBNO2), mRNA. [Source:RefSeq mRNA;Acc:NM_001077911]
Coordinates
chr7:45233229-45236794:-
Coord C1 exon
chr7:45236603-45236794
Coord A exon
chr7:45233953-45234026
Coord C2 exon
chr7:45233229-45233337
Length
74 bp
Sequences
Splice sites
3' ss Seq
TGCCCACTGCTTTGTCATAGGAC
3' ss Score
8.51
5' ss Seq
CCAGTAAGT
5' ss Score
9.09
Exon sequences
Seq C1 exon
GTCATGATGCCACCACCGCGGAGCAAGAAGCCCAGATAGCTGCCCCTGCAGCCTGGCTCCTGGAGCCCCCTGATGCTGGCAGTGGGGCCCGCCATGGATGGGGAGCTCCCTCCGCACGAGGCCCCGCCAGCTGGCAGCGTCCTATACAGCCCGCCGCCGCTGCAGACCCCACTGTGTGGGCCCAGCGTCCAG
Seq A exon
GACACCATGCTGCACTACCCCTGGTGGAACAGCTTCTCGCCCACGACATACCCAGCCTTCTCCAGCGAAAGCCA
Seq C2 exon
CCAGTTCATGAATTCCTCCTTCATCATGGGCCAGCCCTGCACGGACCCCAGCTATGGCCCCGCGGCCACCGCCCCCAGCTTCCCGCCAAAGAGCAGTGATTTTCCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020780-'3-4,'3-2,4-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.800 A=0.000 C2=0.622
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCTGGAGCCCCCTGATG
R:
TGGCCCATGATGAAGGAGGAA
Band lengths:
169-243
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]