DreEX0007730 @ danRer10
Exon Skipping
Gene
ENSDARG00000098801 | SBNO2 (2 of 2)
Description
strawberry notch homolog 2 (Drosophila) [Source:HGNC Symbol;Acc:HGNC:29158]
Coordinates
chr2:57123129-57129705:-
Coord C1 exon
chr2:57129535-57129705
Coord A exon
chr2:57126373-57126452
Coord C2 exon
chr2:57123129-57123216
Length
80 bp
Sequences
Splice sites
3' ss Seq
TTTGTTTCCTGTTTCTCCAGAGT
3' ss Score
9
5' ss Seq
AAGGTAAGC
5' ss Score
10.22
Exon sequences
Seq C1 exon
AGAGATGGCTGACGAATGATGGGGGTTTGACATGTTTCTGGTCGGAGCCTGATGCCCACTCTTGCCACGTCTGTTGTCATGGACACGGAGGACTATCTGCACCCTGAGGGCCCTCAGCTGGGGAGCCCCAAATTCAGCGCTCCCAGTCCTCCTCTCACAAGTTCCATGGAG
Seq A exon
AGTCAGCTGTATCAGCCCAACTCATGGGCGTACTCACAGCAAGCTCAATACAACCAGCACTATCCTATGCAATCTGGAAG
Seq C2 exon
GCAGCTCCAGCCGACCCCGTCCTTTATGAATCTGGACCTGTCTGACATAGACTTTCATGAACTTGTGCGGAATGGAGACTTTTCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000098801-'0-2,'0-1,2-2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.738 A=0.481 C2=0.333
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
ENSDART00000159719fB673
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGACACGGAGGACTATCTGCA
R:
GGGAAAAGTCTCCATTCCGCA
Band lengths:
177-257
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]