BtaEX6041369 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000025124 | ZNF300
Description
zinc finger protein 300 [Source:HGNC Symbol;Acc:HGNC:13091]
Coordinates
chr7:64233853-64237033:-
Coord C1 exon
chr7:64236892-64237033
Coord A exon
chr7:64236526-64236648
Coord C2 exon
chr7:64233853-64235393
Length
123 bp
Sequences
Splice sites
3' ss Seq
CTCTGATTTCTATTTAATAGGGC
3' ss Score
7.65
5' ss Seq
TAGGTAAGT
5' ss Score
9.66
Exon sequences
Seq C1 exon
ATATTACTGTTACAGGGATTAGTATCTTTCAAGGATGTGGCTGTGGATTTCACCCAGGAGGAGTGGCAGCAACTAGACTCTGCTCAGAAGACCCTATACAGGGATGTGATGCTGGAGAACTATAGCCACCTAGTCTCAATGG
Seq A exon
GGCATCCAGTTTCCAAACCAGATGTCATTTCCAAGTTGGAGCAAGGAGAAGATCCATGGATCATTAAAAGAGACATACCAAATTGGATCTGTCCATATGAAGGTCAGGCAGATGGGCGACTAG
Seq C2 exon
ACAGGAAGAGTAACCTTGACAACCCCCAATCATGTATTTTGGGGTCTGTTTCCTTCCATAATAAGATATTGAAAGGAGTCATAAAGGATGGTTCATTATACTCCATTTTAAAAGTCTGTCAAAGTGATGGCCAGTTACAGAGATGTCAGAAAAACAGACTTTCCAGACAAGTAACAGTCATCAACAACAAAACAATGACTGTAGAGTCAGACTACAGATATGATGCACTGAGGAAAATATTTAAAGAGTGCATAGAGTCAGATGCTTCAAGAAACAGACCCTATAACTATGATTCCTTTAAAAAGAACTCGAAATCTAATATTGACCTACCTAGTTGTAACAAGAACAATTCAAGAACAAACCTTGATGAAAGTTTTGAATGTGGAAAATCATTCATCCACAATGTGGCCAATTCTAACCTTGAGAAGCTTCACAATGGAGTAATTCCCTGTAATGATAATGAGCATGGAAATATTTTCAGCAAGAAACAATCCATTATT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000025124-'2-4,'2-3,3-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.071 C2=0.035
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=85.4)
A:
PF0135222=KRAB=PD(0.1=0.0)
C2:
PF134651=zf-H2C2_2=WD(100=5.1),PF134651=zf-H2C2_2=WD(100=5.1),PF134651=zf-H2C2_2=WD(100=5.1),PF134651=zf-H2C2_2=WD(100=4.9),PF134651=zf-H2C2_2=WD(100=4.7),PF134651=zf-H2C2_2=WD(100=5.1),PF134651=zf-H2C2_2=WD(100=5.1),PF134651=zf-H2C2_2=WD(100=4.7),PF134651=zf-H2C2_2=WD(100=5.1),PF134651=zf-H2C2_2=WD(100=4.5),PF134651=zf-H2C2_2=WD(100=5.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGTGGCTGTGGATTTCACCC
R:
ACTGGCCATCACTTTGACAGAC
Band lengths:
243-366
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]