HsaEX6100705 @ hg19

Exon Skipping

Gene

ENSG00000145908 | ZNF300

Description

zinc finger protein 300 [Source:HGNC Symbol;Acc:13091]

Coordinates

chr5:150273964-150278116:-

Coord C1 exon

chr5:150277990-150278116

Coord A exon

chr5:150277624-150277746

Coord C2 exon

chr5:150273964-150276535

Length

123 bp

Sequences

Splice sites

3' ss Seq

CTGTGATTTCTGTTTAATAGGGT

3' ss Score

8.49

5' ss Seq

AAGGGAAGT

5' ss Score

3.35

Exon sequences

Seq C1 exon

GGGTTAGTATCATTCAAGGATGTGGCTGTGGATTTCACCCAGGAGGAGTGGCAGCAACTTGACCCTTCTCAGAGGACCCTGTACAGGGATGTGATGCTGGAGAACTACAGCCACCTGGTCTCAATGG

Seq A exon

GGTATCCAGTTTCCAAACCAGATGTCATCTCCAAGTTGGAACAAGGAGAAGAGCCATGGATCATAAAGGGAGACATATCAAATTGGATCTATCCAGATGAATATCAGGCAGATGGGAGACAAG

Seq C2 exon

ACAGGAAGAGTAACCTTCACAACTCCCAGTCATGTATTTTGGGGACAGTTTCCTTCCATCATAAGATACTGAAAGGAGTCACAAGGGATGGTTCATTGTGCTCCATTTTAAAAGTCTGTCAAGGTGATGGTCAGCTGCAGAGATTTCTAGAGAATCAAGACAAACTCTTCAGGCAGGTCACATTTGTTAACAGCAAAACAGTGACTGAGGCATCAGGGCATAAATATAATCCACTGGGGAAAATATTTCAAGAGTGCATAGAAACAGATATATCAATACAGAGATTCCATAAATATGATGCTTTTAAAAAGAACTTAAAACCAAATATTGACCTACCGAGTTGTTATAAGAGCAATTCAAGAAAAAAACCTGATCAGAGTTTTGGAGGTGGAAAATCATCTAGCCAGAGTGAGCCCAATTCTAATCTTGAGAAGATTCACAATGGAGTAATACCTTTTGATGATAATCAGTGTGGAAACGTTTTTAGAAATACACAATCC

VastDB Features

Vast-tools module Information

Secondary ID

ENSG00000145908-'5-6,'5-5,6-6=AN

Average complexity

A_S

Mappability confidence:

100%=100=100%

Protein Impact

Alternative protein isoforms (Ref)

No structure available

Features

Disorder rate (Iupred):

C1=0.000 A=0.086 C2=0.056

Domain overlap (PFAM):

C1:

PF0135222=KRAB=WD(100=95.3),PF100774=DUF2314=FE(48.8=100)

A:

PF0135222=KRAB=PD(0.1=0.0)

C2:

PF134651=zf-H2C2_2=WD(100=5.0),PF134651=zf-H2C2_2=WD(100=5.0),PF134651=zf-H2C2_2=WD(100=5.0),PF134651=zf-H2C2_2=WD(100=4.8),PF079757=C1_4=WD(100=10.4),PF134651=zf-H2C2_2=WD(100=4.6),PF134651=zf-H2C2_2=WD(100=5.0),PF134651=zf-H2C2_2=WD(100=5.0),PF134651=zf-H2C2_2=WD(100=4.6),PF134651=zf-H2C2_2=WD(100=5.0),PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=5.0)

Main Inclusion Isoform:

ENSP00000397178