BtaEX6042949 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000013108 | HK2
Description
hexokinase 2 [Source:HGNC Symbol;Acc:HGNC:4923]
Coordinates
chr11:9735924-9742578:-
Coord C1 exon
chr11:9742395-9742578
Coord A exon
chr11:9739705-9739860
Coord C2 exon
chr11:9735924-9736157
Length
156 bp
Sequences
Splice sites
3' ss Seq
TGCTGTATCTCTCTCTGCAGATT
3' ss Score
11.96
5' ss Seq
AGGGTAAGC
5' ss Score
9.04
Exon sequences
Seq C1 exon
GCACAGGCAGCAATGCTTGCTACATGGAAGAGATGCGCCACATCGACACGGTGGAGGGCGACGAGGGCCGGATGTGTATCAATATGGAGTGGGGGGCCTTTGGGGATGACGGCGCGCTTGATGACATCCGTACGGAGTTTGATCAGGAGATCGACATGGGCTCTCTGAACCCCGGGAAGCAACT
Seq A exon
ATTTGAAAAGATGATCAGTGGAATGTACATGGGGGAACTGGTGAGGCTTATCCTGGTGAAGATGGCCAAGGAGGAGCTGCTTTTTGGGGGGAAGCTCAGCCCTGAACTTCTTGCCACAGGCCATTTTGAGACCAAAGATGTTTCAGATATTGAAGG
Seq C2 exon
GGAGAAGGATGGCATCCAGAAGGCCCGTGAGATCCTGGTGCGGCTGGGTCTGGACCCAACACATGAGGACTGTGTGGCCACTCATCGGGTCTGCCAGATCGTGTCCACACGCTCAGCCAGCCTGTGCGCGGCCACGCTGGCAGCCGTGCTGTGGCGCATCAAGGAGAACAAAGGCGTGGACCGGCTGCGCTCCACTGTCGGGGTCGACGGCTCAGTCTACAAGAAGCACCCCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013108-'8-9,'8-8,9-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.016 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0372711=Hexokinase_2=FE(25.4=100)
A:
PF0372711=Hexokinase_2=FE(21.7=100)
C2:
PF0372711=Hexokinase_2=FE(32.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTACATGGAAGAGATGCGC
R:
GCCACACAGTCCTCATGTGTT
Band lengths:
245-401
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]