RnoEX0042011 @ rn6
Exon Skipping
Gene
ENSRNOG00000006116 | Hk2
Description
hexokinase 2 [Source:RGD Symbol;Acc:2797]
Coordinates
chr4:113571727-113576563:-
Coord C1 exon
chr4:113576380-113576563
Coord A exon
chr4:113573146-113573301
Coord C2 exon
chr4:113571727-113571960
Length
156 bp
Sequences
Splice sites
3' ss Seq
TGTCACTGGTGTCTCTGCAGGTT
3' ss Score
11.02
5' ss Seq
AGAGTAAGC
5' ss Score
6.31
Exon sequences
Seq C1 exon
GCACTGGCAGCAACGCCTGCTACATGGAGGAAATGCGTCATATTGACATGGTGGAGGGAGATGAGGGGCGCATGTGCATCAACATGGAGTGGGGAGCCTTTGGGGACGACGGTACACTCAATGACATCCGAACCGAGTTTGACCGAGAGATCGACATGGGCTCGCTGAACCCTGGGAAGCAGCT
Seq A exon
GTTTGAGAAGATGATTAGCGGGATGTACATGGGGGAGCTGGTCAGGCTCATCCTGGTGAAGATGGCCAAGGCAGAGCTGTTGTTCCAAGGGAAACTCAGCCCAGAACTCCTTACCACTGGCTCCTTCGAGACCAAAGATGTCTCGGATATTGAAGA
Seq C2 exon
GGATAAGGATGGAATCGAGAAGGCCTACCAAATCCTGATGCGCCTGGGTCTGAATCCATTGCAGGAGGATTGTGTGGCCACGCACCGAATCTGCCAGATTGTGTCCACGCGCTCGGCCAGTCTGTGCGCAGCCACCCTGGCCGCGGTGCTGTGGCGAATCAAAGAGAACAAGGGCGAGGAGCGACTTCGCTCCACCATCGGTGTCGATGGCTCCGTCTACAAGAAACATCCCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006116-'10-11,'10-10,12-11
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.008 A=0.019 C2=0.000
Domain overlap (PFAM):
C1:
PF0372711=Hexokinase_2=FE(25.4=100)
A:
PF0372711=Hexokinase_2=FE(21.7=100)
C2:
PF0372711=Hexokinase_2=FE(32.5=100)
Main Skipping Isoform:
ENSRNOT00000008813fB6543
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACATGGTGGAGGGAGATGAGG
R:
CGTGGACACAATCTGGCAGAT
Band lengths:
248-404
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]