MmuEX6048713 @ mm9
Exon Skipping
Gene
ENSMUSG00000037012 | Hk1
Description
hexokinase 1 [Source:MGI Symbol;Acc:MGI:96103]
Coordinates
chr10:61752908-61758634:-
Coord C1 exon
chr10:61758451-61758634
Coord A exon
chr10:61755062-61755217
Coord C2 exon
chr10:61752908-61753141
Length
156 bp
Sequences
Splice sites
3' ss Seq
TGTGGCATCGACTCCTGCAGGTT
3' ss Score
7.22
5' ss Seq
AACGTAGGT
5' ss Score
7.3
Exon sequences
Seq C1 exon
GCACTGGCACCAATGCTTGCTACATGGAGGAACTGCGACACATCGACCTGGTGGAAGGCGATGAGGGGAGGATGTGTATTAACACGGAATGGGGAGCCTTTGGGGATGATGGGTCCCTGGAAGACATTCGAACAGAGTTTGACAGAGAGTTAGACCGGGGATCCCTCAACCCTGGGAAACAGCT
Seq A exon
GTTCGAGAAGATGGTGAGCGGCATGTACATGGGGGAGCTGGTCCGGCTGATCCTGGTGAAGATGGCCAAGGAAAGCCTCTTATTTGAAGGGCGCATTACTCCAGAGCTGCTCACGAGGGGCAAGTTCACCACTAGCGACGTAGCCGCCATTGAAAC
Seq C2 exon
GGATAAGGAAGGCGTTCAAAATGCCAAGGAAATCTTGACCCGCCTGGGAGTGGAGCCGTCTCACGATGACTGCGTATCGGTCCAGCACGTATGCACGATCGTCTCCTTCCGATCAGCCAACCTGGTGGCTGCCACGCTCGGTGCCATCTTGAACCGCCTGCGGGACAATAAGGGCACGCCCAGGCTGCGGACCACAGTTGGCGTAGACGGTTCTCTCTACAAGATGCACCCACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000037012-'26-27,'26-25,27-27=AN
Average complexity
A_S
Mappability confidence:
89%=75=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.016 A=0.000 C2=0.089
Domain overlap (PFAM):
C1:
PF0372711=Hexokinase_2=FE(46.6=100)
A:
PF0372711=Hexokinase_2=FE(39.7=100)
C2:
PF0372711=Hexokinase_2=FE(60.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTAGACCGGGGATCCCTCAAC
R:
GAGAACCGTCTACGCCAACTG
Band lengths:
250-406
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: