MmuEX6048713 @ mm10
Exon Skipping
Gene
ENSMUSG00000037012 | Hk1
Description
hexokinase 1 [Source:MGI Symbol;Acc:MGI:96103]
Coordinates
chr10:62291975-62295886:-
Coord C1 exon
chr10:62295703-62295886
Coord A exon
chr10:62292314-62292469
Coord C2 exon
chr10:62291975-62292043
Length
156 bp
Sequences
Splice sites
3' ss Seq
TGTGGCATCGACTCCTGCAGGTT
3' ss Score
7.22
5' ss Seq
AACGTAGGT
5' ss Score
7.3
Exon sequences
Seq C1 exon
GCACTGGCACCAATGCTTGCTACATGGAGGAACTGCGACACATCGACCTGGTGGAAGGCGATGAGGGGAGGATGTGTATTAACACGGAATGGGGAGCCTTTGGGGATGATGGGTCCCTGGAAGACATTCGAACAGAGTTTGACAGAGAGTTAGACCGGGGATCCCTCAACCCTGGGAAACAGCT
Seq A exon
GTTCGAGAAGATGGTGAGCGGCATGTACATGGGGGAGCTGGTCCGGCTGATCCTGGTGAAGATGGCCAAGGAAAGCCTCTTATTTGAAGGGCGCATTACTCCAGAGCTGCTCACGAGGGGCAAGTTCACCACTAGCGACGTAGCCGCCATTGAAAC
Seq C2 exon
GGGATGGGAACTCTCCCCTGACCGCAGGTGGTACCAGGCATATATGAGGTGCACACAAGACACCCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000037012-'37-32,'37-31,38-32
Average complexity
C2
Mappability confidence:
88%=75=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.016 A=0.000 C2=0.083
Domain overlap (PFAM):
C1:
PF0372711=Hexokinase_2=FE(46.6=100)
A:
PF0372711=Hexokinase_2=FE(39.7=100)
C2:
PF0372711=Hexokinase_2=PD(6.9=37.5),PF0372711=Hexokinase_2=PU(7.0=37.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCAATGCTTGCTACATGGAGG
R:
CTGTGGGTGTCTTGTGTGCAC
Band lengths:
245-401
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types