DreEX0037682 @ danRer10
Exon Skipping
Gene
ENSDARG00000039452 | hk1
Description
hexokinase 1 [Source:ZFIN;Acc:ZDB-GENE-040426-2848]
Coordinates
chr13:22852618-22855656:-
Coord C1 exon
chr13:22855473-22855656
Coord A exon
chr13:22855230-22855385
Coord C2 exon
chr13:22852618-22852851
Length
156 bp
Sequences
Splice sites
3' ss Seq
GAGTGTTGGCTGTTTGTCAGGTT
3' ss Score
4.16
5' ss Seq
GAAGTAAGT
5' ss Score
9.82
Exon sequences
Seq C1 exon
GTACCGGCACTAATGCATGCTACATGGAGGAGCTCAGACACATGGACATGGTGGAGGGAGATGAAGGCAGGATGTGTATTAATACTGAATGGGGGGCGTTTGGAGATGACGGCACATTGGAGGACATCCGGACTGAGTTTGACAGGGAGATTGACCGAGGATCCCTCAACCCTGGCAAGCAACT
Seq A exon
GTTTGAGAAGATGGTGAGTGGGATGTACATGGGTGAGCTGGTGAGGCTGATCCTGGTCAAAATGGCTAAAGAAGGCCTGCTGTTTGAAGGCCGCATCACACCAGAGCTGCTTACAAAAGGAAAAATCGAAACCAAGCACGTTTCTGCAATTGAGAA
Seq C2 exon
GAGCAAGGAAGGACTAACCAAAGCCAAGGAGATTTTGACACGCTTGGGTGTAGAGCCGTCTGAGGACGACTGCATTGCTGTGCAGCATGTTTGTGCCATTGTCTCTTTTCGCTCTGCTAATCTAATTGCTGCCACTTTGGGTGCAATCCTGACACGTCTGAAGGACAACAAGAACACCCCACGTCTCCGCACTACTGTGGGCATTGATGGCTCCCTATACAAGATGCACCCACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000039452-'8-12,'8-11,9-12
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.016 A=0.000 C2=0.013
Domain overlap (PFAM):
C1:
PF0372711=Hexokinase_2=FE(25.4=100)
A:
PF0372711=Hexokinase_2=FE(21.7=100)
C2:
PF0372711=Hexokinase_2=FE(32.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACAGGGAGATTGACCGAGGA
R:
ATCAATGCCCACAGTAGTGCG
Band lengths:
252-408
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]