GgaEX1028748 @ galGal4
Exon Skipping
Gene
ENSGALG00000004222 | HK1
Description
hexokinase-1 [Source:RefSeq peptide;Acc:NP_989432]
Coordinates
chr6:10483771-10486326:+
Coord C1 exon
chr6:10483771-10483954
Coord A exon
chr6:10484509-10484664
Coord C2 exon
chr6:10486093-10486326
Length
156 bp
Sequences
Splice sites
3' ss Seq
ACTGCTGCCCTCTCCTGTAGGTT
3' ss Score
12.12
5' ss Seq
AAAGTGAGT
5' ss Score
8.4
Exon sequences
Seq C1 exon
GCACTGGTACCAATGCCTGTTACATGGAGGAGATGCGGCACATTGACCTGGTGGAAGGGGACGAGGGCAGGATGTGCATAAACACAGAGTGGGGGGCCTTTGGGGATGACGGCTCACTAGAAGACATCAGGACAGAGTTTGATAGAGAGATCGACCGTGGATCCCTAAATCCTGGCAAGCAACT
Seq A exon
GTTTGAGAAGATGGTCAGCGGGATGTACATGGGGGAGCTGGTGAGGCTCATCCTGGTGAAGATGGCCAAGGAGGGACTGCTCTTTGAGGGGAGAATCACCCCTGAGCTTCTCACCAAAGGAAAGTTTGAGACAAAGCATGTTTCTGCCATAGAAAA
Seq C2 exon
GAGCAAAGAAGGTTTGAACAAAGCCAAAGAAATCTTAACCCGCCTGGGGGTGGAGCCGTCCCACGAGGACTGCATCGCAGTCCAGCACGTCTGCACCATCGTGTCCTTCCGCTCGGCCAACCTGGTGGCCTCCACGCTGGGTGCCATCCTCAACCAGCTGCGGGATAACAAAGGGGTTGGCCGCCTCCGCACCACCGTGGGTGTCGATGGCTCCCTCTACAAGATGCATCCACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004222_MULTIEX1-2/8=1-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.016 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0372711=Hexokinase_2=FE(25.4=100)
A:
PF0372711=Hexokinase_2=FE(21.7=100)
C2:
PF0372711=Hexokinase_2=FE(32.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGGATGACGGCTCACTAGAA
R:
CTTTGTTATCCCGCAGCTGGT
Band lengths:
256-412
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]