GgaEX1028748 @ galGal3
Exon Skipping
Gene
ENSGALG00000004222 | F1NEI1_CHICK
Description
NA
Coordinates
chr6:11993820-11996375:+
Coord C1 exon
chr6:11993820-11994003
Coord A exon
chr6:11994558-11994713
Coord C2 exon
chr6:11996142-11996375
Length
156 bp
Sequences
Splice sites
3' ss Seq
ACTGCTGCCCTCTCCTGTAGGTT
3' ss Score
12.12
5' ss Seq
AAAGTGAGT
5' ss Score
8.4
Exon sequences
Seq C1 exon
GCACTGGTACCAATGCCTGTTACATGGAGGAGATGCGGCACATTGACCTGGTGGAAGGGGACGAGGGCAGGATGTGCATAAACACAGAGTGGGGGGCCTTTGGGGATGACGGCTCACTAGAAGACATCAGGACAGAGTTTGATAGAGAGATCGACCGTGGATCCCTAAATCCTGGCAAGCAACT
Seq A exon
GTTTGAGAAGATGGTCAGCGGGATGTACATGGGGGAGCTGGTGAGGCTCATCCTGGTGAAGATGGCCAAGGAGGGACTGCTCTTTGAGGGGAGAATCACCCCTGAGCTTCTCACCAAAGGAAAGTTTGAGACAAAGCATGTTTCTGCCATAGAAAA
Seq C2 exon
GAGCAAAGAAGGTTTGAACAAAGCCAAAGAAATCTTAACCCGCCTGGGGGTGGAGCCGTCCCACGAGGACTGCATCGCAGTCCAGCACGTCTGCACCATCGTGTCCTTCCGCTCGGCCAACCTGGTGGCCTCCACGCTGGGTGCCATCCTCAACCAGCTGCGGGATAACAAAGGGGTTGGCCGCCTCCGCACCACCGTGGGTGTCGATGGCTCCCTCTACAAGATGCATCCACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004222-'10-14,'10-13,11-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.022 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0372711=Hexokinase_2=FE(25.4=100)
A:
PF0372711=Hexokinase_2=FE(21.7=100)
C2:
PF0372711=Hexokinase_2=FE(32.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGGATGACGGCTCACTAGAA
R:
CTTTGTTATCCCGCAGCTGGT
Band lengths:
256-412
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]