BtaEX6046546 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000038831 | PHYHD1
Description
phytanoyl-CoA dioxygenase domain containing 1 [Source:HGNC Symbol;Acc:HGNC:23396]
Coordinates
chr11:99454337-99456610:+
Coord C1 exon
chr11:99454337-99454399
Coord A exon
chr11:99455283-99455304
Coord C2 exon
chr11:99456482-99456610
Length
22 bp
Sequences
Splice sites
3' ss Seq
GCCCCTCCTCTCTCTTGCAGCAA
3' ss Score
12.46
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
GCTTTGGCCAGAAGTCTGGGCCTCCAGATGCCTGTGGTGGTGCAGAGCATGTATATCTTTAAG
Seq A exon
CAACCTCACTTCGGAGGTGAAG
Seq C2 exon
TCGCCCCTCACCAGGACGCCTCCTTCCTGTACACGGAGCCCCTGGGCCGGGTGCTGGGCCTGTGGATTGCCCTGGAAGACGCCATGCTGGAGAACGGCTGCCTCTGGTTCATCCCTGGGTCCCACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000038831-'15-17,'15-14,17-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF057218=PhyH=FE(10.5=100)
A:
PF057218=PhyH=FE(2.8=100)
C2:
PF057218=PhyH=FE(17.3=100)
Main Skipping Isoform:
ENSBTAT00000055396fB5212
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGTGGTGCAGAGCATGTAT
R:
GTCTTCCAGGGCAATCCACAG
Band lengths:
110-132
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]