GgaEX0006166 @ galGal3
Exon Skipping
Gene
ENSGALG00000004565 | PHYHD1
Description
NA
Coordinates
chr17:5952076-5952647:+
Coord C1 exon
chr17:5952076-5952138
Coord A exon
chr17:5952218-5952239
Coord C2 exon
chr17:5952519-5952647
Length
22 bp
Sequences
Splice sites
3' ss Seq
TGTCTCCCTTCTCCTTGCAGCAA
3' ss Score
12.98
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
GAGCTGGGGAGAAAACTGGGTCTGGAGAGACCAGTGGTTGTGCAGAGCATGTACATCTTCAAG
Seq A exon
CAACCCGGCATCGGCGGGGAAG
Seq C2 exon
TGACACCACACCAGGACGCCACGTTCCTGCACACGGAGCCCCTGGGCCGGGTCCTGGGCTTCTGGATTGCACTGGAGGACGCCACGCAGGAGAACGGCTGCCTGTGGTTCATTCCCGGCTCCCACACCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004565-'5-9,'5-7,6-9
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.045
Domain overlap (PFAM):
C1:
PF057218=PhyH=FE(8.1=100)
A:
PF057218=PhyH=FE(2.8=100)
C2:
PF057218=PhyH=FE(17.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGACCAGTGGTTGTGCAGAG
R:
CTCCAGTGCAATCCAGAAGCC
Band lengths:
114-136
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]