BtaEX6046678 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000004204 | GPR107
Description
Bos taurus G protein-coupled receptor 107 (GPR107), mRNA. [Source:RefSeq mRNA;Acc:NM_001099164]
Coordinates
chr11:100464366-100479689:+
Coord C1 exon
chr11:100464366-100464409
Coord A exon
chr11:100477533-100477582
Coord C2 exon
chr11:100479606-100479689
Length
50 bp
Sequences
Splice sites
3' ss Seq
TGTTGTCTTCTTCTCCCCAGCTG
3' ss Score
10.15
5' ss Seq
TTGGTGAGT
5' ss Score
9.27
Exon sequences
Seq C1 exon
GTCAATCAGGCATTTACAAGAAGCATCAGCCACAGATGGAAAAG
Seq A exon
CTGCTATTAACTTAGCGAAGCTGAAACTTTTCAGACATTACTACGTCTTG
Seq C2 exon
ATCGTATGTTACATATACTTCACCAGGATTATTGCATTTCTCCTCAAACTCGCTGTTCCGTTCCAGTGGAAGTGGCTCTACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004204-'20-27,'20-25,24-27=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF068148=Lung_7-TM_R=FE(5.1=100)
A:
PF068148=Lung_7-TM_R=FE(5.5=100)
C2:
PF068148=Lung_7-TM_R=FE(9.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCAATCAGGCATTTACAAGAAGCA
R:
GGTAGAGCCACTTCCACTGGA
Band lengths:
126-176
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]