DreEX0035773 @ danRer10
Exon Skipping
Gene
ENSDARG00000103200 | gpr107
Description
G protein-coupled receptor 107 [Source:ZFIN;Acc:ZDB-GENE-061103-130]
Coordinates
chr5:31871519-31880540:-
Coord C1 exon
chr5:31880497-31880540
Coord A exon
chr5:31872441-31872490
Coord C2 exon
chr5:31871519-31871602
Length
50 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTTCCTTTTTTTTAGCTG
3' ss Score
11.08
5' ss Seq
ATGGTAAGT
5' ss Score
11.01
Exon sequences
Seq C1 exon
GTCCATTAGACATTTACAAGAGGCATCAGCGACAGATGGCAAAG
Seq A exon
CTGCCATCAATCTGGCTCAACTGAAACTATTTAGGCACTACTATGTGATG
Seq C2 exon
ATTGTATGCTATATTTATTTCACCCGCATCATTGCCAGTCTCATCAAGGTCATTGTTCCTTTCCAGTGGAAGTGGCTTTACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000103200-'17-23,'17-22,19-23
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF068148=Lung_7-TM_R=FE(5.1=100),PF069126=DUF1275=PD(3.5=37.5)
A:
PF068148=Lung_7-TM_R=FE(5.4=100)
C2:
PF068148=Lung_7-TM_R=FE(9.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCCATTAGACATTTACAAGAGGCA
R:
TGGTAAAGCCACTTCCACTGG
Band lengths:
127-177
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]