BtaEX6046698 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000002319 | HMCN2
Description
hemicentin 2 [Source:HGNC Symbol;Acc:HGNC:21293]
Coordinates
chr11:100770229-100770897:+
Coord C1 exon
chr11:100770229-100770466
Coord A exon
chr11:100770600-100770662
Coord C2 exon
chr11:100770775-100770897
Length
63 bp
Sequences
Splice sites
3' ss Seq
CTGTCCCCTTTGCCTTGCAGAAG
3' ss Score
10.85
5' ss Seq
TGGGTGAGC
5' ss Score
7.23
Exon sequences
Seq C1 exon
GACTTCCAGGAGCGGTATGTGCAGACGGGGCCCGGCCGGCTCTTCGTGGGCTCCACGCAGAGCTTCCTGCAGGATAGCCTCCGCTCGTTCCTGCGCTGCAACCACAGCATCCGGTACAGCGCGGCCCAGGGCCCCCAGCCCCAGCTGGTGCAGCACCTGCGGGCCTCCGCTATCAGCTCGGCCTTCGACCCCGAGGCCGAGGCCCTGCACTTCCAGCTCTCCACGGCTCTGCAAGCTG
Seq A exon
AAGAGAATGAGGTTGGCTGCCCGGAGGGCTTTGAGCTGGACGCCCAGGGAGAGTTCTGTGTGG
Seq C2 exon
ACAGGGACGAGTGCTCCGACAGCCCCCGGCCCTGCTCCCACTCCTGCCACAATGCACCTGGCCGCTTCTCCTGCTCCTGCCCGGTTGGCTTCGCCCTGGCCAGGGACGAAAGGACCTGCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002319-'96-104,'96-103,97-104=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF074747=G2F=PD(26.1=61.2)
A:
NO
C2:
PF146701=FXa_inhibition=WD(100=85.7),PF0764510=EGF_CA=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCACTTCCAGCTCTCCAC
R:
TCCTTTCGTCCCTGGCCAG
Band lengths:
148-211
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]