MmuEX0023015 @ mm9
Exon Skipping
Gene
ENSMUSG00000055632 | Hmcn2
Description
hemicentin 2 [Source:MGI Symbol;Acc:MGI:2677838]
Coordinates
chr2:31308903-31310447:+
Coord C1 exon
chr2:31308903-31309140
Coord A exon
chr2:31310148-31310210
Coord C2 exon
chr2:31310325-31310447
Length
63 bp
Sequences
Splice sites
3' ss Seq
TCTTCATGCTTCCATTACAGAGG
3' ss Score
8.19
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
Exon sequences
Seq C1 exon
GACTTCCAGGAGCACTACGTGCAGACAGGGCCTGGCCAGCTATTTGCGGGCTCCACACAGCGTTTCCTCCACGACAGCCTCCCAGCCTCCCTGCGCTGCAATCACAGCATCCAGTATGATGAGACCCGGGGCCTCCAGCCCCAGCTGGTGCAGCATCTTCGGGCCTCTTCTATCAGCTCGGCCTTTGACCCTGAGGCAGAGGCCCTGAACTTCCAGCTTACCACAGCCCTGCAAACAG
Seq A exon
AGGAAAATGAAGTTGGCTGTCCCGAGGGCTTTGAGCCGGATGTGCAGGGAGCATTTTGTGTGG
Seq C2 exon
ACAAGGACGAATGCTCAGGAGGTCCCAGCCCCTGCTCTCATACCTGCCGCAATGCTCCTGGTCATTTCTCCTGCTCCTGCCCCACTGGCTTCTCCCTGGCTTGGGACCACAGGAATTGTAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000055632-'96-97,'96-95,97-97
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.050 A=0.182 C2=0.000
Domain overlap (PFAM):
C1:
PF074747=G2F=PD(27.5=61.2)
A:
NO
C2:
PF146701=FXa_inhibition=WD(100=85.7),PF0764510=EGF_CA=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTATCAGCTCGGCCTTTGACC
R:
GCAGGAGAAATGACCAGGAGC
Band lengths:
143-206
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: