BtaEX6046699 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000002319 | HMCN2
Description
hemicentin 2 [Source:HGNC Symbol;Acc:HGNC:21293]
Coordinates
chr11:100769753-100770662:+
Coord C1 exon
chr11:100769753-100769874
Coord A exon
chr11:100770229-100770466
Coord C2 exon
chr11:100770600-100770662
Length
238 bp
Sequences
Splice sites
3' ss Seq
CCACCCCCCACCCCGCCCAGGAC
3' ss Score
6.15
5' ss Seq
CTGGTGAGG
5' ss Score
8.3
Exon sequences
Seq C1 exon
GGGAGCTGCTCACTATGACCCAGGTGGCCCGGGGCCTGGATCCCAACGGCCTCCTGCTCCTCGATGTGGTGGTCAATGGCATCGTCCCCGAGAGCCTAGCGGATGCAGATCTGCAAGTGCAG
Seq A exon
GACTTCCAGGAGCGGTATGTGCAGACGGGGCCCGGCCGGCTCTTCGTGGGCTCCACGCAGAGCTTCCTGCAGGATAGCCTCCGCTCGTTCCTGCGCTGCAACCACAGCATCCGGTACAGCGCGGCCCAGGGCCCCCAGCCCCAGCTGGTGCAGCACCTGCGGGCCTCCGCTATCAGCTCGGCCTTCGACCCCGAGGCCGAGGCCCTGCACTTCCAGCTCTCCACGGCTCTGCAAGCTG
Seq C2 exon
AAGAGAATGAGGTTGGCTGCCCGGAGGGCTTTGAGCTGGACGCCCAGGGAGAGTTCTGTGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002319-'95-103,'95-102,96-103=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF074747=G2F=FE(21.3=100)
A:
PF074747=G2F=PD(26.1=61.2)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGCTGCTCACTATGACCCA
R:
CCACACAGAACTCTCCCTGGG
Band lengths:
184-422
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]