MmuEX6100338 @ mm10
Exon Skipping
Gene
ENSMUSG00000055632 | Hmcn2
Description
hemicentin 2 [Source:MGI Symbol;Acc:MGI:2677838]
Coordinates
chr2:31453043-31454690:+
Coord C1 exon
chr2:31453043-31453164
Coord A exon
chr2:31453383-31453620
Coord C2 exon
chr2:31454628-31454690
Length
238 bp
Sequences
Splice sites
3' ss Seq
GGACCCTCCCTTTCCCCCAGGAC
3' ss Score
10.08
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
GGGAGCTACTCACAATGACCCAGGTGGCTCGGGGCCTGGATCCTGATGGACTCCTGCTCGTGGACATGAAAATCAATGGCATGATCCCAGAGAGCCTGGCTGACGGAGATCTGCGAGTACAG
Seq A exon
GACTTCCAGGAGCACTACGTGCAGACAGGGCCTGGCCAGCTATTTGCGGGCTCCACACAGCGTTTCCTCCACGACAGCCTCCCAGCCTCCCTGCGCTGCAATCACAGCATCCAGTATGATGAGACCCGGGGCCTCCAGCCCCAGCTGGTGCAGCATCTTCGGGCCTCTTCTATCAGCTCGGCCTTTGACCCTGAGGCAGAGGCCCTGAACTTCCAGCTTACCACAGCCCTGCAAACAG
Seq C2 exon
AGGAAAATGAAGTTGGCTGTCCCGAGGGCTTTGAGCCGGATGTGCAGGGAGCATTTTGTGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000055632-'111-126,'111-123,121-126=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.050 C2=0.182
Domain overlap (PFAM):
C1:
PF074747=G2F=FE(21.3=100)
A:
PF074747=G2F=PD(26.1=61.2)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGAGCTACTCACAATGACCC
R:
CCACACAAAATGCTCCCTGC
Band lengths:
185-423
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types